Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060397.seq
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0706 + 5811722-5814025                                           29   3.3  
11_01_0107 - 801148-803633,803727-803860,803990-804006,804321-80...    29   4.3  
12_01_0107 - 843820-846335,846400-846511                               28   5.7  
01_06_0205 - 27495030-27495128,27495397-27496265,27496352-274965...    28   5.7  
03_06_0392 - 33583375-33583554,33583646-33584126,33584211-33584452     28   7.5  
02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,677...    28   7.5  

>11_01_0706 + 5811722-5814025
          Length = 767

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +2

Query: 227 SLQSSRGRSPPSDEMAKRLGELKNYWTQLEDPLDERI--LNTLKAISILSGDTRGDLSGK 400
           SL S  G  P      KRL  L   W QL   + E+I  +N+L+++ +      G++   
Sbjct: 574 SLNSLTGGIPDEITSLKRLLSLNLSWNQLSGEIVEKIGAMNSLESLDLSRNKFSGEIPPS 633

Query: 401 YKHLVRISGDDM 436
             +L  +S  D+
Sbjct: 634 LANLAYLSYLDL 645


>11_01_0107 -
           801148-803633,803727-803860,803990-804006,804321-804504,
           804819-804883
          Length = 961

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 227 SLQSSRGRSPPSDEMAKRLGELKNYWTQLEDPLDERILNTLKAI 358
           SL S     P +D   + + EL+  ++  E+PLD+ I+ +L  I
Sbjct: 386 SLGSKMNEGPRTDPHGRLIEELEMSFSDAEEPLDQNIMVSLNDI 429


>12_01_0107 - 843820-846335,846400-846511
          Length = 875

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
 Frame = +2

Query: 227 SLQSSRGRSPPSDEMAKRLGELKNYWTQLEDPLDERILNTLKAIS--ILSGDTRG----D 388
           SL S     P +D   + + EL+  ++  E+PLD+ I+ +L  I   IL   ++     +
Sbjct: 300 SLGSKMNDGPRTDPHGRLIEELEMSFSDAEEPLDQNIMVSLNDIEKPILDEVSKENHILE 359

Query: 389 LSGKYKHLVRISGDD 433
             GK  H++ + G +
Sbjct: 360 EDGKESHILDVDGKE 374


>01_06_0205 -
           27495030-27495128,27495397-27496265,27496352-27496511,
           27497136-27497208,27497311-27497430,27498454-27498618,
           27498695-27498785,27499381-27499465,27499555-27499740,
           27499843-27499899,27499998-27500282
          Length = 729

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 525 RCISQKCQVHHLRYCYRISRFDGHHSDDT 611
           + +   C  H  R CYRI   D  ++DDT
Sbjct: 689 KSLGSSCATHFHRLCYRIQDDDRGNADDT 717


>03_06_0392 - 33583375-33583554,33583646-33584126,33584211-33584452
          Length = 300

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 206 DWTKTGSSLQSSRGRSPPSDEMAKRLGELK 295
           DW+   + L ++ G   P +E+ +RLGE +
Sbjct: 176 DWSSIRAELNAATGSGFPVEELQRRLGEFR 205


>02_02_0099 +
           6768115-6768285,6769950-6770034,6770501-6770628,
           6771429-6771465,6773108-6774193,6774337-6774447,
           6774701-6774817,6774818-6775120,6776092-6776513,
           6776645-6777274
          Length = 1029

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/80 (21%), Positives = 30/80 (37%)
 Frame = +1

Query: 370 RRHQRRSEWKI*TSSPH*RR*HAPIIGRTSRHLSSGA*DSNCYLTNAITAYTAALARNAK 549
           +R   + ++K      H +   A I+G+  +       D N   +N+I     A+    K
Sbjct: 594 KRSMEKQDYKSFLEKQHQKEMEAAIVGQRQKSDDESGGDGNNKDSNSIAPSAIAINSKKK 653

Query: 550 STISDIATASADLMVITQMI 609
            T  DI T      +   +I
Sbjct: 654 QTTKDIVTTQGAQFISESLI 673


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,951,803
Number of Sequences: 37544
Number of extensions: 354715
Number of successful extensions: 1002
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)