Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060397.seq
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51573| Best HMM Match : UCR_TM (HMM E-Value=6.7)                    29   3.3  
SB_36289| Best HMM Match : RNA_pol_N (HMM E-Value=1.9)                 28   5.8  
SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)            28   5.8  
SB_7319| Best HMM Match : SRCR (HMM E-Value=0)                         28   5.8  
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_51573| Best HMM Match : UCR_TM (HMM E-Value=6.7)
          Length = 93

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 216 RPVPAFNPPEVGHPPLMKWQNDWE 287
           RP P  +P +  HPP   W+N  E
Sbjct: 13  RPNPVPSPSDAAHPPFASWRNSEE 36


>SB_36289| Best HMM Match : RNA_pol_N (HMM E-Value=1.9)
          Length = 857

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 222 PVFVQSCNRQPQSEPPLSIQFQIDQWCQESGKPL 121
           PVF Q+C +       L+ Q Q+ QWC E  +PL
Sbjct: 6   PVFHQACQK-------LAYQVQLVQWCLEKAQPL 32


>SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)
          Length = 562

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 221 GSSLQSSRGRSPPSDEMAKRLGELKNYWTQLEDPLDE 331
           G+S +  RGRSP SDE  K+  + K    + E+P ++
Sbjct: 479 GASERRRRGRSPKSDEQKKKDEDSKPEEAKPEEPKED 515


>SB_7319| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 957

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 454 TSRHLSSGA*DSNCYL-TNAITAYTAALARNAKSTISDIATASAD 585
           TS   ++ A  SNC L TNA  +     A+N+  ++S  ATASA+
Sbjct: 557 TSCTNTTAAPSSNCSLATNATASANTTAAQNSDCSLSTNATASAN 601


>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 331 ENSQYLESDQHPERRHQR-RSEWKI*TSSPH*RR*HAPIIGRTSRH 465
           E S++ ES++H   RH+R R E     SSPH    H      TSRH
Sbjct: 20  ERSRH-ESNRHKTSRHERSRHETSRHESSPHETSRHETSRHETSRH 64


>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2324

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +1

Query: 436  APIIGRTSRHLSSGA*DSNCYLTNAITAYTAALARNAKSTISDIATASADLMVITQMI 609
            +P  G TSR + S    S+ Y TN  + Y     R   ST +D AT   DL  + +++
Sbjct: 1015 SPTPGSTSRSMQSNPVPSHHYFTNRYSPY----QRTHTSTTADGATPVIDLREMAKVL 1068


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,264,584
Number of Sequences: 59808
Number of extensions: 404006
Number of successful extensions: 4322
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4321
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)