Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060397.seq
(658 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ021880-1|AAY26398.1| 724|Homo sapiens GRB2-associated binding... 36 0.13
BC064848-1|AAH64848.1| 724|Homo sapiens GRB2-associated binding... 36 0.13
AK022142-1|BAB13970.1| 275|Homo sapiens protein ( Homo sapiens ... 36 0.13
X79201-1|CAA55792.1| 391|Homo sapiens SYT protein. 33 0.90
CR542103-1|CAG46900.1| 391|Homo sapiens SS18 protein. 33 0.90
CR542088-1|CAG46885.1| 391|Homo sapiens SS18 protein. 33 0.90
BC096224-1|AAH96224.1| 387|Homo sapiens synovial sarcoma transl... 33 0.90
BC096223-1|AAH96223.1| 418|Homo sapiens synovial sarcoma transl... 33 0.90
BC096222-1|AAH96222.1| 418|Homo sapiens synovial sarcoma transl... 33 0.90
BC096221-1|AAH96221.1| 387|Homo sapiens synovial sarcoma transl... 33 0.90
AF343880-1|AAK21314.1| 422|Homo sapiens SYT variant 1 protein. 33 0.90
AF257501-1|AAG31035.1| 369|Homo sapiens SYT/SSX4v fusion protei... 33 0.90
AF257500-1|AAG31034.1| 492|Homo sapiens SYT/SSX4 fusion protein... 33 0.90
AF244972-1|AAM00188.1| 414|Homo sapiens SYT protein protein. 33 0.90
AF230662-1|AAF79937.1| 492|Homo sapiens unknown protein. 33 0.90
AB300357-1|BAF56184.1| 457|Homo sapiens fusion protein SYT-SSX2... 33 0.90
AB300356-1|BAF56183.1| 488|Homo sapiens fusion protein SYT-SSX2... 33 0.90
AB300355-1|BAF56182.1| 457|Homo sapiens fusion protein SYT-SSX1... 33 0.90
AB300354-1|BAF56181.1| 488|Homo sapiens fusion protein SYT-SSX1... 33 0.90
X63692-1|CAA45219.1| 1616|Homo sapiens DNA (cytosine-5-)-methylt... 30 8.3
BC126227-1|AAI26228.1| 1632|Homo sapiens DNMT1 protein protein. 30 8.3
BC092517-1|AAH92517.1| 1511|Homo sapiens DNMT1 protein protein. 30 8.3
AF180682-1|AAF23609.1| 1280|Homo sapiens DNA (cytosine-5)-methyl... 30 8.3
AB209413-1|BAD92650.1| 1606|Homo sapiens DNA (cytosine-5-)-methy... 30 8.3
>DQ021880-1|AAY26398.1| 724|Homo sapiens GRB2-associated binding
protein 1 protein.
Length = 724
Score = 35.9 bits (79), Expect = 0.13
Identities = 25/73 (34%), Positives = 35/73 (47%)
Frame = +3
Query: 57 PALVCDCEYPPLKRNYQLIYPIMASHSLDTIDLSEIGLTREVLTGVGDYMTGQRPVPAFN 236
P V DCE PP+ RN + P S + L GL R +GD+ T ++ PA
Sbjct: 508 PVPVADCEPPPVDRN---LKPDRKGQSPKILRLKPHGLERTDSQTIGDFATRRKVKPA-- 562
Query: 237 PPEVGHPPLMKWQ 275
P E+ PL +W+
Sbjct: 563 PLEI--KPLPEWE 573
>BC064848-1|AAH64848.1| 724|Homo sapiens GRB2-associated binding
protein 1 protein.
Length = 724
Score = 35.9 bits (79), Expect = 0.13
Identities = 25/73 (34%), Positives = 35/73 (47%)
Frame = +3
Query: 57 PALVCDCEYPPLKRNYQLIYPIMASHSLDTIDLSEIGLTREVLTGVGDYMTGQRPVPAFN 236
P V DCE PP+ RN + P S + L GL R +GD+ T ++ PA
Sbjct: 508 PVPVADCEPPPVDRN---LKPDRKGQSPKILRLKPHGLERTDSQTIGDFATRRKVKPA-- 562
Query: 237 PPEVGHPPLMKWQ 275
P E+ PL +W+
Sbjct: 563 PLEI--KPLPEWE 573
>AK022142-1|BAB13970.1| 275|Homo sapiens protein ( Homo sapiens
cDNA FLJ12080 fis, clone HEMBB1002477, highly similar to
Human Grb2-associated binder-1 mRNA. ).
Length = 275
Score = 35.9 bits (79), Expect = 0.13
Identities = 25/73 (34%), Positives = 35/73 (47%)
Frame = +3
Query: 57 PALVCDCEYPPLKRNYQLIYPIMASHSLDTIDLSEIGLTREVLTGVGDYMTGQRPVPAFN 236
P V DCE PP+ RN + P S + L GL R +GD+ T ++ PA
Sbjct: 59 PVPVADCEPPPVDRN---LKPDRKGQSPKILRLKPHGLERTDSQTIGDFATRRKVKPA-- 113
Query: 237 PPEVGHPPLMKWQ 275
P E+ PL +W+
Sbjct: 114 PLEI--KPLPEWE 124
>X79201-1|CAA55792.1| 391|Homo sapiens SYT protein.
Length = 391
Score = 33.1 bits (72), Expect = 0.90
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 195 GDYMTGQRPVPAFNPPEVGHPPLMKWQNDW 284
G++M GQR +P + PP+ G P Q D+
Sbjct: 245 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDY 274
>CR542103-1|CAG46900.1| 391|Homo sapiens SS18 protein.
Length = 391
Score = 33.1 bits (72), Expect = 0.90
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 195 GDYMTGQRPVPAFNPPEVGHPPLMKWQNDW 284
G++M GQR +P + PP+ G P Q D+
Sbjct: 245 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDY 274
>CR542088-1|CAG46885.1| 391|Homo sapiens SS18 protein.
Length = 391
Score = 33.1 bits (72), Expect = 0.90
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 195 GDYMTGQRPVPAFNPPEVGHPPLMKWQNDW 284
G++M GQR +P + PP+ G P Q D+
Sbjct: 245 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDY 274
>BC096224-1|AAH96224.1| 387|Homo sapiens synovial sarcoma
translocation, chromosome 18 protein.
Length = 387
Score = 33.1 bits (72), Expect = 0.90
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 195 GDYMTGQRPVPAFNPPEVGHPPLMKWQNDW 284
G++M GQR +P + PP+ G P Q D+
Sbjct: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDY 270
>BC096223-1|AAH96223.1| 418|Homo sapiens synovial sarcoma
translocation, chromosome 18 protein.
Length = 418
Score = 33.1 bits (72), Expect = 0.90
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 195 GDYMTGQRPVPAFNPPEVGHPPLMKWQNDW 284
G++M GQR +P + PP+ G P Q D+
Sbjct: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDY 270
>BC096222-1|AAH96222.1| 418|Homo sapiens synovial sarcoma
translocation, chromosome 18 protein.
Length = 418
Score = 33.1 bits (72), Expect = 0.90
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 195 GDYMTGQRPVPAFNPPEVGHPPLMKWQNDW 284
G++M GQR +P + PP+ G P Q D+
Sbjct: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDY 270
>BC096221-1|AAH96221.1| 387|Homo sapiens synovial sarcoma
translocation, chromosome 18 protein.
Length = 387
Score = 33.1 bits (72), Expect = 0.90
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 195 GDYMTGQRPVPAFNPPEVGHPPLMKWQNDW 284
G++M GQR +P + PP+ G P Q D+
Sbjct: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDY 270
>AF343880-1|AAK21314.1| 422|Homo sapiens SYT variant 1 protein.
Length = 422
Score = 33.1 bits (72), Expect = 0.90
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 195 GDYMTGQRPVPAFNPPEVGHPPLMKWQNDW 284
G++M GQR +P + PP+ G P Q D+
Sbjct: 245 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDY 274
>AF257501-1|AAG31035.1| 369|Homo sapiens SYT/SSX4v fusion protein
protein.
Length = 369
Score = 33.1 bits (72), Expect = 0.90
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 195 GDYMTGQRPVPAFNPPEVGHPPLMKWQNDW 284
G++M GQR +P + PP+ G P Q D+
Sbjct: 217 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDY 246
>AF257500-1|AAG31034.1| 492|Homo sapiens SYT/SSX4 fusion protein
protein.
Length = 492
Score = 33.1 bits (72), Expect = 0.90
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 195 GDYMTGQRPVPAFNPPEVGHPPLMKWQNDW 284
G++M GQR +P + PP+ G P Q D+
Sbjct: 245 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDY 274
>AF244972-1|AAM00188.1| 414|Homo sapiens SYT protein protein.
Length = 414
Score = 33.1 bits (72), Expect = 0.90
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 195 GDYMTGQRPVPAFNPPEVGHPPLMKWQNDW 284
G++M GQR +P + PP+ G P Q D+
Sbjct: 245 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDY 274
>AF230662-1|AAF79937.1| 492|Homo sapiens unknown protein.
Length = 492
Score = 33.1 bits (72), Expect = 0.90
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 195 GDYMTGQRPVPAFNPPEVGHPPLMKWQNDW 284
G++M GQR +P + PP+ G P Q D+
Sbjct: 245 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDY 274
>AB300357-1|BAF56184.1| 457|Homo sapiens fusion protein SYT-SSX2
protein.
Length = 457
Score = 33.1 bits (72), Expect = 0.90
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 195 GDYMTGQRPVPAFNPPEVGHPPLMKWQNDW 284
G++M GQR +P + PP+ G P Q D+
Sbjct: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDY 270
>AB300356-1|BAF56183.1| 488|Homo sapiens fusion protein SYT-SSX2
protein.
Length = 488
Score = 33.1 bits (72), Expect = 0.90
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 195 GDYMTGQRPVPAFNPPEVGHPPLMKWQNDW 284
G++M GQR +P + PP+ G P Q D+
Sbjct: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDY 270
>AB300355-1|BAF56182.1| 457|Homo sapiens fusion protein SYT-SSX1
protein.
Length = 457
Score = 33.1 bits (72), Expect = 0.90
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 195 GDYMTGQRPVPAFNPPEVGHPPLMKWQNDW 284
G++M GQR +P + PP+ G P Q D+
Sbjct: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDY 270
>AB300354-1|BAF56181.1| 488|Homo sapiens fusion protein SYT-SSX1
protein.
Length = 488
Score = 33.1 bits (72), Expect = 0.90
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 195 GDYMTGQRPVPAFNPPEVGHPPLMKWQNDW 284
G++M GQR +P + PP+ G P Q D+
Sbjct: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDY 270
>X63692-1|CAA45219.1| 1616|Homo sapiens DNA
(cytosine-5-)-methyltransferase protein.
Length = 1616
Score = 29.9 bits (64), Expect = 8.3
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 269 FHQRGVTD-LWRIEGWNRSLSSHVIANPSQNL 177
FHQ G++D LW IE W+ + + + NP +
Sbjct: 1155 FHQAGISDTLWAIEMWDPAAQAFRLNNPGSTV 1186
>BC126227-1|AAI26228.1| 1632|Homo sapiens DNMT1 protein protein.
Length = 1632
Score = 29.9 bits (64), Expect = 8.3
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 269 FHQRGVTD-LWRIEGWNRSLSSHVIANPSQNL 177
FHQ G++D LW IE W+ + + + NP +
Sbjct: 1171 FHQAGISDTLWAIEMWDPAAQAFRLNNPGSTV 1202
>BC092517-1|AAH92517.1| 1511|Homo sapiens DNMT1 protein protein.
Length = 1511
Score = 29.9 bits (64), Expect = 8.3
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 269 FHQRGVTD-LWRIEGWNRSLSSHVIANPSQNL 177
FHQ G++D LW IE W+ + + + NP +
Sbjct: 1050 FHQAGISDTLWAIEMWDPAAQAFRLNNPGSTV 1081
>AF180682-1|AAF23609.1| 1280|Homo sapiens DNA
(cytosine-5)-methyltransferase protein.
Length = 1280
Score = 29.9 bits (64), Expect = 8.3
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 269 FHQRGVTD-LWRIEGWNRSLSSHVIANPSQNL 177
FHQ G++D LW IE W+ + + + NP +
Sbjct: 819 FHQAGISDTLWAIEMWDPAAQAFRLNNPGSTV 850
>AB209413-1|BAD92650.1| 1606|Homo sapiens DNA
(cytosine-5-)-methyltransferase 1 variant protein.
Length = 1606
Score = 29.9 bits (64), Expect = 8.3
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 269 FHQRGVTD-LWRIEGWNRSLSSHVIANPSQNL 177
FHQ G++D LW IE W+ + + + NP +
Sbjct: 1142 FHQAGISDTLWAIEMWDPAAQAFRLNNPGSTV 1173
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,383,453
Number of Sequences: 237096
Number of extensions: 1904575
Number of successful extensions: 4832
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 4646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4832
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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