Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060397.seq
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28735-11|AAM69114.1|  358|Caenorhabditis elegans Hypothetical p...    32   0.41 
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    32   0.41 
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr...    32   0.41 
U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domai...    30   1.3  
L14745-9|AAK71355.2|  380|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca...    28   5.1  

>U28735-11|AAM69114.1|  358|Caenorhabditis elegans Hypothetical
           protein F48E3.8c protein.
          Length = 358

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 17/49 (34%), Positives = 30/49 (61%)
 Frame = +2

Query: 236 SSRGRSPPSDEMAKRLGELKNYWTQLEDPLDERILNTLKAISILSGDTR 382
           +S G+ PP++   K++ ++       +DP+ +RI+NTLK  S+ SG  R
Sbjct: 39  TSTGKIPPNNFDTKQVPQM--VMLSFDDPITDRIINTLK--SLFSGSIR 83


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 17/49 (34%), Positives = 30/49 (61%)
 Frame = +2

Query: 236  SSRGRSPPSDEMAKRLGELKNYWTQLEDPLDERILNTLKAISILSGDTR 382
            +S G+ PP++   K++ ++       +DP+ +RI+NTLK  S+ SG  R
Sbjct: 2108 TSTGKIPPNNFDTKQVPQM--VMLSFDDPITDRIINTLK--SLFSGSIR 2152


>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical protein
            F48E3.8b protein.
          Length = 1299

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 17/49 (34%), Positives = 30/49 (61%)
 Frame = +2

Query: 236  SSRGRSPPSDEMAKRLGELKNYWTQLEDPLDERILNTLKAISILSGDTR 382
            +S G+ PP++   K++ ++       +DP+ +RI+NTLK  S+ SG  R
Sbjct: 980  TSTGKIPPNNFDTKQVPQM--VMLSFDDPITDRIINTLK--SLFSGSIR 1024


>U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domain
           protein protein 1 protein.
          Length = 709

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 507 CDNRLYRCISQKCQVHHLRYCYRISRFDGHHSDDTVP 617
           C+N  Y C+  K + H+  YC  ++ F   +  +T P
Sbjct: 608 CNNNTYWCLRTKNETHNFLYCEFVTEFISFYDFNTDP 644


>L14745-9|AAK71355.2|  380|Caenorhabditis elegans Hypothetical
           protein C02F5.12 protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = -3

Query: 308 ESSNSSVLPIVLPFHQRGVTDLWRIEGWNRSLSSHVIANPSQNLPCQSNFR*INGVKRVG 129
           ESS+++ + I   F   G+   WR++     L  H + + ++ +PC+        V+R+ 
Sbjct: 229 ESSHANYV-ITCNFPGCGLKYNWRVKYGKLRLLDHALTHSNRKIPCKLCGFECTNVRRMR 287

Query: 128 SHY 120
           SHY
Sbjct: 288 SHY 290


>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
           protein 4 protein.
          Length = 2325

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 120 IMASHSLDTIDLSEIGLTREVLTGVGDYMTGQRP 221
           ++ S  LD  D S+  +  EV TGVG Y   +RP
Sbjct: 109 MVRSKYLDDFDASDESVQYEVTTGVGRYFVLRRP 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,043,742
Number of Sequences: 27780
Number of extensions: 284896
Number of successful extensions: 821
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)