Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060397.seq
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.6  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   5.9  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/14 (57%), Positives = 9/14 (64%), Gaps = 1/14 (7%)
 Frame = +2

Query: 161 NWIDK-GGSDWGWR 199
           NW+   GGS W WR
Sbjct: 163 NWVGVFGGSAWSWR 176


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/14 (57%), Positives = 9/14 (64%), Gaps = 1/14 (7%)
 Frame = +2

Query: 161 NWIDK-GGSDWGWR 199
           NW+   GGS W WR
Sbjct: 163 NWVGVFGGSAWSWR 176


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = +3

Query: 498 PYECDNRLYRCISQKCQVHHLR 563
           P++C+   Y C+++     HL+
Sbjct: 16  PFKCEKCSYSCVNKSMLNSHLK 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,939
Number of Sequences: 438
Number of extensions: 3192
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)