Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060397.seq
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49430.1 68418.m06116 transducin family protein / WD-40 repea...    29   2.7  
At2g05120.1 68415.m00539 expressed protein                             29   3.6  
At5g64510.1 68418.m08104 expressed protein                             28   6.3  
At3g20190.1 68416.m02559 leucine-rich repeat transmembrane prote...    28   6.3  
At2g24930.1 68415.m02981 Ulp1 protease family protein contains P...    27   8.3  

>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
           family protein similar to WD-repeat protein 9
           (SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
           domain, G-beta repeat (4 copies)
          Length = 1677

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = +1

Query: 433 HAPIIGRTSRHLSSGA*DSNCYLTNAITAYTAALARNAKSTISDIATASADLMV 594
           +  I+ R+ R++ +G+ D    + +  TAY  A  R  +  I+D+A +S ++ +
Sbjct: 249 YCAILDRSGRYVITGSDDRLVKVWSMDTAYCLASCRGHEGDITDLAVSSNNIFI 302


>At2g05120.1 68415.m00539 expressed protein 
          Length = 1234

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 179 GSDWGWRLHDW-TKTGSSLQSSRGRSPPSDEMAKRLGELKNYWTQL 313
           G  W   +  W T  G++ ++SR RSP    M  R      YW+ +
Sbjct: 157 GKSWLVNVVSWDTSAGAATRASRSRSPVGVVMCNRKTRAVVYWSDI 202


>At5g64510.1 68418.m08104 expressed protein
          Length = 424

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 308 ESSNSSVLPIVLPFHQRGVTDLWRIEGWNRSLS 210
           ++S+  VLP++ PF   G  +LW  +  N  LS
Sbjct: 123 KTSSDDVLPVLAPFQLSGPMELWIQDANNMRLS 155


>At3g20190.1 68416.m02559 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor kinase GB:AAA33715
           [Petunia integrifolia]
          Length = 679

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = -3

Query: 338 EFSHQEDPLTESSNSSVLPIVLPFHQRGVTDLWRIEGWNRSLSSHVIANPSQNLP---CQ 168
           EF      L    + ++LPIV  +++R    L      NRSL+SH+ AN S + P     
Sbjct: 412 EFHEHMRRLGRLKHPNLLPIVAYYYRREEKLLIAEFMPNRSLASHLHANHSVDQPGLDWP 471

Query: 167 SNFR*INGVKRVGSHYRVNQL 105
           +  + I GV + G  Y  N+L
Sbjct: 472 TRLKIIQGVAK-GLGYLFNEL 491


>At2g24930.1 68415.m02981 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 926

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 281 LGELKNYWT-QLEDPLDERILNTLKAISILSGDTRGDLSGKYKHLVR 418
           L EL ++W  QLEDP  + ++  L  + ++ G      S K K L++
Sbjct: 278 LSELFHFWPDQLEDPALDNLIQDLHEVKLVKGYWDVKTSEKKKKLLK 324


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,470,725
Number of Sequences: 28952
Number of extensions: 277273
Number of successful extensions: 840
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)