Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060396.seq
         (564 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   4.2  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   5.5  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   9.6  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    21   9.6  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 309 SLIWQLPQTKITLKMTQTLKNLTI 380
           +L+ +LP T ++L   QTL  L +
Sbjct: 353 NLLGKLPLTSLSLASAQTLSELDL 376


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 104 KQVPAKGKKRKANTNLVTSEP 166
           K    K K+RK    L+T EP
Sbjct: 95  KNCKLKNKERKVKPLLITDEP 115


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 180 CFTFLGSDVTKFVFALRFL 124
           C  FLGS +  F+F L  L
Sbjct: 235 CVFFLGSILIFFIFPLAIL 253


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -1

Query: 156 VTKFVFALRFLPLAGTCFCILDIN 85
           V KF+ ++R + +    FC+++ N
Sbjct: 6   VKKFLHSVRIVFVQSEIFCLVNFN 29


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,316
Number of Sequences: 336
Number of extensions: 1726
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13890653
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)