Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060396.seq
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    26   4.4  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            25   5.8  
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.7  

>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 65  VNYHYY*FMSKMQKQVPAKGKKRKANTNLVTSEPKNVKQNSL 190
           V Y Y    +++  + P K  K   +TN+  SEP+   QN L
Sbjct: 82  VRYRYLNKYARLPHEAPIKEAKLGPDTNIRPSEPRIGFQNYL 123


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 92  SKMQKQVPAKGKKRKANTNLVTSEPKNVKQNSLVNADNKNSI 217
           SK+QK  P  G        +V   P+N K+  ++ +D    I
Sbjct: 166 SKLQKLEPIMGHVSILTQLIVAQNPQNSKEEIIITSDKDEHI 207


>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +2

Query: 62  TVNYHYY*FMSKMQKQV--PAKGKKRKANTNLVTSEPKNVKQNSLVNAD 202
           TV   YY  +S  +K    P K K  K        + KN K+++LVN +
Sbjct: 16  TVYVAYYFLVSSDKKLATKPQKSKLTKLGKQKQRQKQKNTKKDTLVNRE 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,758,203
Number of Sequences: 5004
Number of extensions: 27213
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)