Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060396.seq
         (564 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    24   3.9  
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    24   3.9  
AJ441131-2|CAD29631.1|  208|Anopheles gambiae hypothetical prote...    23   9.1  
AJ439398-1|CAD28124.1|  208|Anopheles gambiae hypothetical prote...    23   9.1  
AJ439061-1|CAD27770.1|   89|Anopheles gambiae hypothetical prote...    23   9.1  

>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 110 VPAKGKKRKANTNLVTSEPKNVKQNSLVNADNKNS 214
           V  + +++KAN N+ ++     KQ    NAD+ +S
Sbjct: 34  VVVQDRRKKANPNVQSTSALRKKQARSSNADSSHS 68


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 110 VPAKGKKRKANTNLVTSEPKNVKQNSLVNADNKNS 214
           V  + +++KAN N+ ++     KQ    NAD+ +S
Sbjct: 34  VVVQDRRKKANPNVQSTSALRKKQARSSNADSSHS 68


>AJ441131-2|CAD29631.1|  208|Anopheles gambiae hypothetical protein
           protein.
          Length = 208

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 525 RWFLPFFFSPH 493
           RW++P FF+ H
Sbjct: 60  RWYIPAFFAAH 70


>AJ439398-1|CAD28124.1|  208|Anopheles gambiae hypothetical protein
           protein.
          Length = 208

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 525 RWFLPFFFSPH 493
           RW++P FF+ H
Sbjct: 60  RWYIPAFFAAH 70


>AJ439061-1|CAD27770.1|   89|Anopheles gambiae hypothetical protein
           protein.
          Length = 89

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 525 RWFLPFFFSPH 493
           RW++P FF+ H
Sbjct: 60  RWYIPAFFAAH 70


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 430,625
Number of Sequences: 2352
Number of extensions: 5882
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52983882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)