Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060396.seq
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67953-3|AAL13328.1|  321|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical ...    28   4.0  

>U67953-3|AAL13328.1|  321|Caenorhabditis elegans Hypothetical
           protein ZC13.2 protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -2

Query: 545 LVRVSFYAGFSLFFLARIRISLFFNVVFNXTHXHQ*RFFQLAELVLISVVV 393
           LV + F+ G  +FF+  IR  +    +FN T       FQ+A   L++ ++
Sbjct: 176 LVIICFWFGSGVFFIFTIRCEVLDTAIFNTTILILVVLFQIAHAGLVTSLI 226


>AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical
            protein T05C3.2 protein.
          Length = 1733

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 113  PAKGKKRK-ANTNLVTSEPKNVKQNSLVNADNKNSILD 223
            P + KK+K    N + + P N  Q  +V +DNK+S+ D
Sbjct: 1535 PRQSKKQKDVMINKIIAMPSNSNQIIVVESDNKSSVWD 1572


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,678,180
Number of Sequences: 27780
Number of extensions: 154234
Number of successful extensions: 366
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)