Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060396.seq
         (564 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02040.1 68417.m00274 expressed protein                             30   1.2  
At5g11270.1 68418.m01316 expressed protein                             29   2.1  
At1g07650.1 68414.m00821 leucine-rich repeat transmembrane prote...    27   8.7  

>At4g02040.1 68417.m00274 expressed protein 
          Length = 152

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 95  KMQKQVPAKGKKRKANTNLVTSEPKNVKQNSLVNADNKN 211
           + +KQ P   K   AN NLV  + K +K+   ++A NKN
Sbjct: 37  RRRKQSPTVVKSPAANPNLVMEQVKILKRGETLSAFNKN 75


>At5g11270.1 68418.m01316 expressed protein 
          Length = 354

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 116 AKGKKRKANTNLVTSEPKNVKQNSLVNADN 205
           A+GK RK   +  +S PK  K+ SL  ADN
Sbjct: 59  ARGKNRKGFVSSSSSSPKKNKKKSLDGADN 88


>At1g07650.1 68414.m00821 leucine-rich repeat transmembrane protein
            kinase, putative similar to GB:AAC50043 from [Arabidopsis
            thaliana] (Plant Mol. Biol. 37 (4), 587-596 (1998))
          Length = 1014

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 155  TSEPKNVKQNSLVNADNKNSILD 223
            TS P+    NSLV+A+ K  +LD
Sbjct: 992  TSGPRTASANSLVDAEEKTGLLD 1014


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,876,833
Number of Sequences: 28952
Number of extensions: 131735
Number of successful extensions: 322
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)