Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060395.seq
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p...    35   0.009
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ...    35   0.009
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    35   0.012
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    32   0.062
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    28   1.0  
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    27   3.1  
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||...    27   3.1  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    25   9.4  

>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 303

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 19/38 (50%), Positives = 21/38 (55%)
 Frame = +1

Query: 139 FYTWPSAPLLAWYLWTQRRHIRGLRVLELGCGTGLPGI 252
           F TW SAPLL+  L         +  LELG GTGL GI
Sbjct: 114 FKTWGSAPLLSANLPKWEDLSNSINALELGAGTGLVGI 151


>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 19/37 (51%), Positives = 23/37 (62%)
 Frame = +1

Query: 145 TWPSAPLLAWYLWTQRRHIRGLRVLELGCGTGLPGIL 255
           TW +   LA Y++ Q     G+RVLELG GTGL  IL
Sbjct: 152 TWEAGMALAEYIY-QHPVQSGMRVLELGAGTGLVSIL 187


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 133 YSFYTWPSAPLLAWYLWTQRRHIRGLRVLELGCGTGLPGIL 255
           ++ Y W S   LA Y+      +R  +VLELG G GLP I+
Sbjct: 53  WAHYLWNSGIELANYIDKNPDTVRAKKVLELGAGAGLPSIV 93


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 32.3 bits (70), Expect = 0.062
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +3

Query: 369 QIVGLTWGLFLGDLHNLRPVDLILASDCFYEPSQFEEVLSTVAYLLEALTRVF--CVLTR 542
           +++   WG F+G+L N R VD ++     +  +  +E + T + LL+  +++   C +  
Sbjct: 655 EVIETHWGKFMGELENARTVDNLMQEHIDFLDTCLKECMLTNSRLLKVQSKLLNTCAMFA 714

Query: 543 NAAQTGLLKLY 575
           +   T    LY
Sbjct: 715 SYTSTFTRSLY 725


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -2

Query: 532 TQKTRVSASSRYATVDSTSSNCDGS*KQSDARIRSTGRKLCRSPKNK--PHVRPTICKSR 359
           T   ++S  S+ +T+D T +      K  D    +  +K   S KNK  P       +  
Sbjct: 161 THSPQLSVPSKTSTIDKTDTRSTEKTKGKDIFSNARNQKGNSSRKNKKAPLENHKEKEPL 220

Query: 358 LGTKPLASQQAER*RSDLGNV 296
           L  +   S+QA+R R DL N+
Sbjct: 221 LPKEEKLSEQAKRERDDLKNI 241


>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 50  FSAQDPLQTATLE-VNIWRLLSRSYCQPVIRFTRG 151
           FS  +   TA+ + VN +RLL R + QPV+  T G
Sbjct: 25  FSNFNRYSTASHDNVNAFRLLMRRFAQPVVIITSG 59


>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -1

Query: 248 PGSPVPQPNSNTLRPRICRLC-VHKYQAS 165
           PG P+P+P     RP    L  + KYQ S
Sbjct: 10  PGDPIPRPRKKRYRPGTTALREIRKYQRS 38


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
 Frame = +1

Query: 103 IVIPELLSAGYS-FYTW----PSAPLLAWYLWTQRRHIRGLRVLEL-GCGTGLPGILPRS 264
           +++P +L   +S F+ W    P+ P+   YL+        L V+ +  C T  PGILPR+
Sbjct: 94  LILPGVLFFIFSAFWLWHHVSPAVPITFAYLYA-------LAVVSMFKCSTADPGILPRN 146

Query: 265 A 267
           A
Sbjct: 147 A 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,785
Number of Sequences: 5004
Number of extensions: 52755
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)