Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060395.seq
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0151 + 1067067-1067222,1067586-1067690,1067904-1067990,106... 50 2e-06
04_04_1360 + 32889597-32890343 40 0.001
05_06_0123 + 25817172-25817470,25818983-25819133,25819217-258193... 35 0.048
03_02_0334 + 7570568-7570709,7571622-7571844,7572178-7572257,757... 35 0.048
01_06_0665 - 31003333-31003680,31003773-31003854,31004068-310041... 35 0.048
03_06_0526 - 34515218-34515372,34515454-34515567,34515651-345157... 33 0.15
04_04_0349 + 24588184-24588315,24588481-24588543,24588674-245887... 33 0.20
07_03_1453 - 26649922-26650064,26650148-26650244,26651260-266514... 33 0.26
09_04_0721 + 19725695-19725697,19725793-19725859,19725944-197260... 31 0.79
05_06_0187 - 26212133-26212477,26212564-26212645,26213066-262131... 31 1.0
05_04_0096 - 17931061-17931435,17931539-17931620,17932319-179324... 30 1.4
02_03_0172 + 15965342-15965711,15967757-15967849,15967976-159680... 29 4.2
01_07_0132 - 41298184-41298558,41298648-41298729,41298850-412989... 29 4.2
07_03_1704 + 28839628-28839908,28840010-28840123,28840416-288407... 28 5.6
06_01_0651 + 4711369-4712431,4713069-4713763 28 5.6
05_03_0622 - 16293341-16293350,16293783-16294063,16294343-162944... 28 5.6
07_03_0543 + 19272389-19272534,19273337-19273496,19273584-192737... 28 7.4
06_01_0265 - 1961511-1962497 28 7.4
02_01_0447 - 3220489-3220560,3221287-3221420,3221500-3221731,322... 28 7.4
06_01_0939 + 7232682-7232933,7233048-7233228,7233354-7233463,723... 27 9.7
03_01_0302 - 2361948-2362649,2363422-2363617,2363873-2363997,236... 27 9.7
>02_01_0151 +
1067067-1067222,1067586-1067690,1067904-1067990,
1068071-1068121,1068265-1068291,1068292-1068385,
1068610-1068845
Length = 251
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +1
Query: 97 LEIVIPELLSAGYSFYTWPSAPLLAWYLWTQRRHIRGLRVLELGCGTGLPGIL 255
L + I E + Y + WP + +LA Y+W QR V+ELG GT LPG++
Sbjct: 46 LRVDIIENIEEDYGMFVWPCSVILAEYVWQQRSRFTASTVVELGAGTSLPGLV 98
Score = 41.5 bits (93), Expect = 6e-04
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Frame = +3
Query: 189 KATYSRSESVGVRLRNRTAGNTAAKCGALVTLTDSLTLPRSLRHLSACCEANGL--VPNR 362
++ ++ S V + G AAK GA VTLTD L ++ C N + N+
Sbjct: 77 RSRFTASTVVELGAGTSLPGLVAAKVGADVTLTDIAHNTEVLNNIRQVCGLNNVNCTLNK 136
Query: 363 D---LQIVGLTWGLFLGDLHNLRPVDLILASDCFYEPSQ 470
+Q++GLTWG + +L P D+IL +D Y+ ++
Sbjct: 137 STTLMQVLGLTWGEWDEPTFDLHP-DVILGADVLYDSAR 174
>04_04_1360 + 32889597-32890343
Length = 248
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = +1
Query: 142 YTWPSAPLLAWYLWT--QRRHIRGLRVLELGCGTGLPGI 252
+ W S+ +LA +L + H+RG VLELG GTGLPGI
Sbjct: 46 WLWDSSLVLASHLASCVHHHHLRGATVLELGAGTGLPGI 84
>05_06_0123 +
25817172-25817470,25818983-25819133,25819217-25819399,
25819740-25819814,25819985-25820140,25820275-25820373,
25820457-25820587,25821077-25821158,25821251-25821598
Length = 507
Score = 35.1 bits (77), Expect = 0.048
Identities = 31/127 (24%), Positives = 51/127 (40%)
Frame = +3
Query: 180 VDAKATYSRSESVGVRLRNRTAGNTAAKCGALVTLTDSLTLPRSLRHLSACCEANGLVPN 359
+D K +++VG R A N+ L T T++ + + +A + GL+P
Sbjct: 229 LDMKIAALVNDTVGTLAGGRYADNSVVAAIILGTGTNAAYVENA----NAIPKWTGLLPR 284
Query: 360 RDLQIVGLTWGLFLGDLHNLRPVDLILASDCFYEPSQFEEVLSTVAYLLEALTRVFCVLT 539
++ WG F D L D + + Q E L + YL E + R+ L
Sbjct: 285 SGNMVINTEWGSFKSDKLPLSEFDKAMDFESLNPGEQIYEKLISGMYLGEIVRRILLKLA 344
Query: 540 RNAAQTG 560
+AA G
Sbjct: 345 HDAALFG 351
>03_02_0334 +
7570568-7570709,7571622-7571844,7572178-7572257,
7572869-7572929,7573670-7573796
Length = 210
Score = 35.1 bits (77), Expect = 0.048
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 148 WPSAPLLAWYLWTQRRHIRGLRVLELGCGTGLPGI 252
WPS +LA+Y R +VLELG G GL G+
Sbjct: 151 WPSEEVLAYYCINHSDMFRSKKVLELGSGYGLAGL 185
>01_06_0665 -
31003333-31003680,31003773-31003854,31004068-31004198,
31004272-31004370,31004511-31004666,31004877-31004951,
31005554-31005736,31005833-31005983,31006732-31007027
Length = 506
Score = 35.1 bits (77), Expect = 0.048
Identities = 30/127 (23%), Positives = 51/127 (40%)
Frame = +3
Query: 180 VDAKATYSRSESVGVRLRNRTAGNTAAKCGALVTLTDSLTLPRSLRHLSACCEANGLVPN 359
+D K T +++VG R N A L T T++ + H +A + GL+P
Sbjct: 228 LDMKVTALVNDTVGTLAGGRYVDNDVAAAVILGTGTNAAYV----EHANAIPKWTGLLPR 283
Query: 360 RDLQIVGLTWGLFLGDLHNLRPVDLILASDCFYEPSQFEEVLSTVAYLLEALTRVFCVLT 539
++ + WG F + D L + Q E + + YL E + R+ L
Sbjct: 284 SGNMVINMEWGNFKSERLPRSDYDNALDFESLNPGEQIYEKMISGMYLGEIVRRILLKLA 343
Query: 540 RNAAQTG 560
+A+ G
Sbjct: 344 HDASLFG 350
>03_06_0526 -
34515218-34515372,34515454-34515567,34515651-34515722,
34515832-34515974,34516457-34516635,34517798-34517874,
34517994-34518150
Length = 298
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +1
Query: 148 WPSAPLLAWYLWTQRRHIRGLRVLELGCGTGLPGILPRSA 267
WP L A +L + + G R+LELG GTG I R A
Sbjct: 111 WPGTFLFADWLVKNKSILHGRRILELGSGTGALAIFLRKA 150
>04_04_0349 +
24588184-24588315,24588481-24588543,24588674-24588740,
24588819-24588919,24589082-24589126,24589236-24589697,
24589905-24590075
Length = 346
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1
Query: 202 RGLRVLELGCGTGLPGI 252
RG RVLELGCG+GL GI
Sbjct: 115 RGKRVLELGCGSGLAGI 131
>07_03_1453 -
26649922-26650064,26650148-26650244,26651260-26651418,
26651478-26651603
Length = 174
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 148 WPSAPLLAWYLWTQRRHIRGLRVLELGCGTGLPGIL 255
WP A L+ YL ++ ++ELG G G+ GIL
Sbjct: 98 WPGAVLMNTYLSEHPETVKDHSIIELGSGVGITGIL 133
>09_04_0721 +
19725695-19725697,19725793-19725859,19725944-19726044,
19726780-19726824,19727052-19727522,19727972-19728142
Length = 285
Score = 31.1 bits (67), Expect = 0.79
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +1
Query: 202 RGLRVLELGCGTGLPGI 252
R +VLELGCG GLPGI
Sbjct: 51 RSKQVLELGCGYGLPGI 67
>05_06_0187 -
26212133-26212477,26212564-26212645,26213066-26213196,
26213267-26213365,26213627-26213782,26213891-26213965,
26214156-26214338,26214431-26214581,26215456-26215718
Length = 494
Score = 30.7 bits (66), Expect = 1.0
Identities = 29/127 (22%), Positives = 51/127 (40%)
Frame = +3
Query: 180 VDAKATYSRSESVGVRLRNRTAGNTAAKCGALVTLTDSLTLPRSLRHLSACCEANGLVPN 359
+D K T ++++G R N L T T++ + R+ +A + + L+P
Sbjct: 217 LDMKVTALINDTIGTLAGGRYDDNDVIAAVILGTGTNAAYVERA----NAIPKWHDLLPK 272
Query: 360 RDLQIVGLTWGLFLGDLHNLRPVDLILASDCFYEPSQFEEVLSTVAYLLEALTRVFCVLT 539
++ + WG F L D L ++ Q E L + YL E + RV +
Sbjct: 273 SGDMVINMEWGNFRSSHLPLTEFDQALDAESLNPGEQVYEKLISGMYLGEIVRRVLLKMA 332
Query: 540 RNAAQTG 560
A+ G
Sbjct: 333 EEASLFG 339
>05_04_0096 -
17931061-17931435,17931539-17931620,17932319-17932446,
17932523-17932621,17932739-17932894,17934120-17934194,
17934582-17934749,17934825-17934993,17936640-17936923
Length = 511
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 327 ACCEANGLVPNRDLQIVGLTWGLFLGDLHNLRPVDLILASDCF-YEPSQFEEVLSTVAYL 503
A ++ G V N + +V + WG F L P D+ ++ + Y FE+++S V YL
Sbjct: 270 AIIKSLGRVTNSERTVVNVEWGSFRPPQIELTPYDICFNNETWNYYDQGFEKMISGV-YL 328
Query: 504 LEALTRVF 527
E VF
Sbjct: 329 GEIARLVF 336
>02_03_0172 +
15965342-15965711,15967757-15967849,15967976-15968060,
15968749-15968824,15968992-15969120,15969473-15969571,
15969661-15969762,15970257-15970415,15970507-15970602,
15971497-15971647,15971782-15971893,15972004-15972074,
15972548-15972984,15973421-15973492,15973713-15973810,
15974350-15974425,15975512-15975634,15975776-15975844
Length = 805
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = -2
Query: 478 SSNCDGS*KQSDARIRSTGRKLCRSPKNKPHVRPTICKSRLGTKPLASQQAER*RS 311
S NC ++ R +GR+ +P+N PH PT +S G + +S +R RS
Sbjct: 492 SDNCHRIGYGGNSANRKSGREYKETPENTPHTGPTSDQSPEGCR--SSNYLQRKRS 545
>01_07_0132 -
41298184-41298558,41298648-41298729,41298850-41298977,
41299059-41299157,41299279-41299434,41300709-41300783,
41301962-41302137,41303210-41303252,41303336-41303503,
41303584-41303731,41306316-41306587
Length = 573
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 312 LRHLSACCEANGLVPNRDLQIVGLTWGLFLGDLHNLRPVDLILASDCFYEPSQ-FEEVLS 488
+ A + GL+ N +V + WG F P D++L + Q FE+++S
Sbjct: 327 IERTDAIIKCQGLLTNSGGMVVNMEWGNFWSSHLPRTPYDILLDDETHNRNDQGFEKMIS 386
Query: 489 TVAYLLEALTRVF 527
+ YL E VF
Sbjct: 387 GM-YLGEIARLVF 398
>07_03_1704 + 28839628-28839908,28840010-28840123,28840416-28840769,
28841072-28841268,28841496-28841587,28841700-28842027,
28842328-28842535,28843555-28843669,28844023-28844190,
28844804-28845476,28845552-28845758,28845911-28847001
Length = 1275
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 79 DTRGEYLEIVIPELLSAGYSFYTWPSAPLLAWYLWTQR 192
D EY+ + + L +WPS P++A LWTQ+
Sbjct: 936 DKSSEYIHAISGQALENCAGGSSWPSMPIIA-ALWTQK 972
>06_01_0651 + 4711369-4712431,4713069-4713763
Length = 585
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +1
Query: 16 GRPVSGQLKKFVFRARSSTNGDTRGEYLEIVI---PELLSAGYSFYTWPSAP 162
G PV+GQ +AR N DT + PELL++G S T+ P
Sbjct: 440 GAPVAGQSNVLTAQARGDPNEDTGFSVHNCTVVASPELLASGVSTRTFLGRP 491
>05_03_0622 -
16293341-16293350,16293783-16294063,16294343-16294474,
16294561-16294741,16295054-16295096,16295183-16295249,
16296708-16296834,16296985-16297620,16298253-16298761,
16298842-16299157,16299615-16300053,16300128-16300353,
16300441-16300625,16300839-16300950,16301459-16301495,
16301977-16302011,16302497-16302810,16303463-16303475
Length = 1220
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -3
Query: 273 ALRTSRQYSRQSCSAT*LQHSQTANMSPLRPQVPS*QRRRWPR 145
A +R S +SC+AT S RPQ P+ RRRW R
Sbjct: 18 ATAATRHLSLRSCAATSFLPRSNHRPSLARPQEPA--RRRWSR 58
>07_03_0543 +
19272389-19272534,19273337-19273496,19273584-19273741,
19273852-19273945,19274082-19274198,19275119-19275229,
19275309-19275396,19275615-19275718,19275796-19275867,
19275950-19276039,19276151-19276308,19276746-19276752,
19277140-19277194,19277273-19277421,19277543-19277664,
19277916-19278105
Length = 606
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -3
Query: 528 KKRASVPQADTLQLIVLLRIVMARKSNRTQESDLPDVSYVDHPKTSP 388
++RA QADT L V+ +++ Q++ PD SY+ P TSP
Sbjct: 496 EQRAWTFQADTYGLCVIAHMMLHGTQMSIQKTPRPDGSYMYQP-TSP 541
>06_01_0265 - 1961511-1962497
Length = 328
Score = 27.9 bits (59), Expect = 7.4
Identities = 36/103 (34%), Positives = 47/103 (45%), Gaps = 13/103 (12%)
Frame = +3
Query: 177 LVDAKATYSRSESVGVRLRNRTAGNT-------AAKCGALVTLT---DSLTLPRSLRHLS 326
LVD+ AT++R VGV + + T T A GA+V LT D L+L S
Sbjct: 151 LVDSVATFARRRQVGVCVLSATGAVTNVSVRQPGAGPGAVVNLTGRFDILSLSGSFLPPP 210
Query: 327 ACCEANGL---VPNRDLQIVGLTWGLFLGDLHNLRPVDLILAS 446
A A GL V Q+VG G G L + PV ++ AS
Sbjct: 211 APPSATGLTVYVSGGQGQVVG---GTVAGPLIAVGPVVIMAAS 250
>02_01_0447 -
3220489-3220560,3221287-3221420,3221500-3221731,
3221817-3222015,3222101-3222181,3222260-3222315,
3222493-3222623,3222700-3222847,3224151-3224321,
3224417-3224775,3224898-3225189
Length = 624
Score = 27.9 bits (59), Expect = 7.4
Identities = 22/80 (27%), Positives = 42/80 (52%)
Frame = -2
Query: 565 NRPVCAAFLVRTQKTRVSASSRYATVDSTSSNCDGS*KQSDARIRSTGRKLCRSPKNKPH 386
+RP+C+AFL+ Q R + ++ +A ST+ S + A + GR + + +P+
Sbjct: 42 SRPLCSAFLI--QFRRQAGAAAHAAATSTAEG-SASVLVTPASSPALGRP--NNSRFRPN 96
Query: 385 VRPTICKSRLGTKPLASQQA 326
+ TI KS T P+ +++
Sbjct: 97 IE-TIKKSAAPTSPICEKKS 115
>06_01_0939 +
7232682-7232933,7233048-7233228,7233354-7233463,
7233833-7233911,7233979-7234046,7234129-7234195,
7234704-7234834
Length = 295
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +1
Query: 190 RRHIRGLRVLELGCGTGLPGIL 255
R + G+R++++G G GLPG++
Sbjct: 117 RGDLGGMRLVDVGSGAGLPGLI 138
>03_01_0302 -
2361948-2362649,2363422-2363617,2363873-2363997,
2364118-2364180,2364445-2364495,2364597-2364668,
2364779-2364886,2365031-2365135,2365505-2365555,
2365971-2365995,2366234-2366258,2366352-2366439
Length = 536
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 148 WPSAPLLAWYLWTQRRHIRGLRVLELGCGT 237
W SA + L + G RVLELGCG+
Sbjct: 337 WESAQFMCSVLAENPSILAGKRVLELGCGS 366
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,473,696
Number of Sequences: 37544
Number of extensions: 368435
Number of successful extensions: 1071
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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