Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060395.seq
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63855.3 68414.m07228 expressed protein                             55   5e-08
At1g63855.1 68414.m07229 expressed protein                             55   5e-08
At1g63855.2 68414.m07230 expressed protein                             50   1e-06
At3g50850.1 68416.m05568 expressed protein                             45   5e-05
At5g49560.1 68418.m06134 expressed protein similar to SP|P40389 ...    37   0.013
At2g43320.1 68415.m05386 expressed protein                             33   0.22 
At1g77460.1 68414.m09020 C2 domain-containing protein / armadill...    31   0.50 
At2g26200.1 68415.m03146 expressed protein                             31   0.66 
At4g14000.1 68417.m02165 expressed protein                             31   0.87 
At2g19860.1 68415.m02322 hexokinase 2 (HXK2) identical to hexoki...    31   0.87 
At4g29130.1 68417.m04169 hexokinase 1 (HXK1) identical to hexoki...    30   1.5  
At2g26810.1 68415.m03217 expressed protein  and genefinder             28   4.7  
At3g48900.1 68416.m05342 single-strand DNA endonuclease, putativ...    28   6.1  

>At1g63855.3 68414.m07228 expressed protein
          Length = 196

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 31/74 (41%), Positives = 44/74 (59%)
 Frame = +3

Query: 246 GNTAAKCGALVTLTDSLTLPRSLRHLSACCEANGLVPNRDLQIVGLTWGLFLGDLHNLRP 425
           G  AAK GA VTLTD  T P  L ++   CE N L    +  ++GLTWG++   + +LRP
Sbjct: 72  GLVAAKVGANVTLTDDATKPEVLDNMRRVCELNKL----NCNVLGLTWGVWDAPILDLRP 127

Query: 426 VDLILASDCFYEPS 467
            ++IL +D  Y+ S
Sbjct: 128 -NIILGADVLYDSS 140



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/51 (43%), Positives = 29/51 (56%)
 Frame = +1

Query: 103 IVIPELLSAGYSFYTWPSAPLLAWYLWTQRRHIRGLRVLELGCGTGLPGIL 255
           I I E L   Y  + WP + +LA Y+W  R   R   +LELG GT LPG++
Sbjct: 24  ISIIENLKEEYGLFVWPCSVILAEYVWQHRSRFRDSSILELGAGTSLPGLV 74


>At1g63855.1 68414.m07229 expressed protein
          Length = 159

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 31/74 (41%), Positives = 44/74 (59%)
 Frame = +3

Query: 246 GNTAAKCGALVTLTDSLTLPRSLRHLSACCEANGLVPNRDLQIVGLTWGLFLGDLHNLRP 425
           G  AAK GA VTLTD  T P  L ++   CE N L    +  ++GLTWG++   + +LRP
Sbjct: 72  GLVAAKVGANVTLTDDATKPEVLDNMRRVCELNKL----NCNVLGLTWGVWDAPILDLRP 127

Query: 426 VDLILASDCFYEPS 467
            ++IL +D  Y+ S
Sbjct: 128 -NIILGADVLYDSS 140



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/51 (43%), Positives = 29/51 (56%)
 Frame = +1

Query: 103 IVIPELLSAGYSFYTWPSAPLLAWYLWTQRRHIRGLRVLELGCGTGLPGIL 255
           I I E L   Y  + WP + +LA Y+W  R   R   +LELG GT LPG++
Sbjct: 24  ISIIENLKEEYGLFVWPCSVILAEYVWQHRSRFRDSSILELGAGTSLPGLV 74


>At1g63855.2 68414.m07230 expressed protein
          Length = 111

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/51 (43%), Positives = 29/51 (56%)
 Frame = +1

Query: 103 IVIPELLSAGYSFYTWPSAPLLAWYLWTQRRHIRGLRVLELGCGTGLPGIL 255
           I I E L   Y  + WP + +LA Y+W  R   R   +LELG GT LPG++
Sbjct: 24  ISIIENLKEEYGLFVWPCSVILAEYVWQHRSRFRDSSILELGAGTSLPGLV 74



 Score = 34.7 bits (76), Expect = 0.054
 Identities = 18/35 (51%), Positives = 20/35 (57%)
 Frame = +3

Query: 246 GNTAAKCGALVTLTDSLTLPRSLRHLSACCEANGL 350
           G  AAK GA VTLTD  T P  L ++   CE N L
Sbjct: 72  GLVAAKVGANVTLTDDATKPEVLDNMRRVCELNKL 106


>At3g50850.1 68416.m05568 expressed protein
          Length = 251

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
 Frame = +3

Query: 255 AAKCGALVTLTDSLTLPRSLRHLSACCEANGLVPNR---DLQIVGLTWGLFLGDLHNL-R 422
           AA  GA VT+TD   LP  + +L    +AN  V  +    + +  L WG  + D+ +L +
Sbjct: 107 AATLGANVTVTD---LPNVIENLKFNADANAQVVAKFGGKVHVASLRWGE-IDDVESLGQ 162

Query: 423 PVDLILASDCFYEPSQFEEVLSTVAYLL 506
            VDLILASD  Y    +E +L T+ +LL
Sbjct: 163 NVDLILASDVVYHVHLYEPLLKTLRFLL 190


>At5g49560.1 68418.m06134 expressed protein similar to SP|P40389
           Rapid response to glucose protein 1 {Schizosaccharomyces
           pombe}
          Length = 274

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
 Frame = +3

Query: 255 AAKCGALVTLTDSLTLPRSLRHLSACCEANGLVPNR---DLQIVGLTWGLFLGDLHNL-R 422
           A    A VT+TD   LP  L +L+   EAN  +  R    + +  L WG    D+  L +
Sbjct: 124 AITLSANVTVTD---LPHVLDNLNFNAEANAEIVERFGGKVNVAPLRWGE-ADDVEVLGQ 179

Query: 423 PVDLILASDCFYEPSQFEEVLSTVAYL-LEALTRVF 527
            VDLILASD  Y    +E +L T+  + LE    +F
Sbjct: 180 NVDLILASDVVYHDHLYEPLLKTLRLMQLEGKRLIF 215


>At2g43320.1 68415.m05386 expressed protein
          Length = 351

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +1

Query: 136 SFYTWPSAPLLAWYLWTQRRH----IRGLRVLELGCGTGLPGI 252
           S  +W S+ +L   L  + R      RG RVLELGC  G+PGI
Sbjct: 88  SLKSWESSVVLVNVLKNEIRDGQLSFRGKRVLELGCNFGVPGI 130


>At1g77460.1 68414.m09020 C2 domain-containing protein /
            armadillo/beta-catenin repeat family protein similar to
            CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
            profiles PF00514: Armadillo/beta-catenin-like repeat,
            PF00168: C2 domain
          Length = 2110

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 7/148 (4%)
 Frame = +3

Query: 150  AICASASLVLVDAKATYSRSESVGVRLRNRTAGNTAAKCGALVTLTDSLTL---PRSLRH 320
            A C  A L LVD+  +     +    +    A     K G   +    + L   P SL  
Sbjct: 777  AQCRFAILSLVDSLKSIDVDSADAFNILEVVALLAKTKSGVNFSYPPWIALAEVPSSLET 836

Query: 321  LSAC-CEANGLVPNRDLQIVGLTWG---LFLGDLHNLRPVDLILASDCFYEPSQFEEVLS 488
            L  C  E + LV ++ ++++          L +L   RP  +++ +D     S  E  + 
Sbjct: 837  LVQCLAEGHTLVQDKAIEVLSRLCSDQQFLLSELIVSRPKSMLVLADRIVNASSLEVRVG 896

Query: 489  TVAYLLEALTRVFCVLTRNAAQTGLLKL 572
            + A LL A      ++T    Q+G LKL
Sbjct: 897  STALLLCAAKEKKQLITETLDQSGFLKL 924


>At2g26200.1 68415.m03146 expressed protein
          Length = 565

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 148 WPSAPLLAWYLWTQRRHIRGLRVLELGCG-TGL 243
           W SA L+A  L      + G RVLELGCG TG+
Sbjct: 358 WESARLMASVLDRNPNIVSGKRVLELGCGCTGI 390


>At4g14000.1 68417.m02165 expressed protein
          Length = 290

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 13/16 (81%), Positives = 13/16 (81%)
 Frame = +1

Query: 205 GLRVLELGCGTGLPGI 252
           G RVLELGCG  LPGI
Sbjct: 115 GKRVLELGCGHALPGI 130


>At2g19860.1 68415.m02322 hexokinase 2 (HXK2) identical to
           hexokinase 2 [Arabidopsis thaliana] Swiss-Prot:P93834
          Length = 502

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 21/73 (28%), Positives = 29/73 (39%)
 Frame = +3

Query: 342 NGLVPNRDLQIVGLTWGLFLGDLHNLRPVDLILASDCFYEPSQFEEVLSTVAYLLEALTR 521
           +GL+P     ++ + WG F      L   D  L  D      Q  E + +  YL E L R
Sbjct: 270 HGLLPKSGEMVINMEWGNFRSSHLPLTEYDHSLDVDSLNPGEQILEKIISGMYLGEILRR 329

Query: 522 VFCVLTRNAAQTG 560
           V   +   AA  G
Sbjct: 330 VLLKMAEEAAFFG 342


>At4g29130.1 68417.m04169 hexokinase 1 (HXK1) identical to
           hexokinase 1 [Arabidopsis thaliana] Swiss-Prot:Q42525
          Length = 496

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/73 (27%), Positives = 30/73 (41%)
 Frame = +3

Query: 342 NGLVPNRDLQIVGLTWGLFLGDLHNLRPVDLILASDCFYEPSQFEEVLSTVAYLLEALTR 521
           +GL+P     ++ + WG F      L   D  L  +      Q  E + +  YL E L R
Sbjct: 270 HGLLPKSGEMVINMEWGNFRSSHLPLTEFDHTLDFESLNPGEQILEKIISGMYLGEILRR 329

Query: 522 VFCVLTRNAAQTG 560
           V   +  +AA  G
Sbjct: 330 VLLKMAEDAAFFG 342


>At2g26810.1 68415.m03217 expressed protein  and genefinder
          Length = 197

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 148 WPSAPLLAWYLWTQRRHIRGLRVLELGCGTGL 243
           WP A L+  YL      ++G  VLELG G  L
Sbjct: 58  WPGAMLMNGYLSENADILQGCSVLELGSGVEL 89


>At3g48900.1 68416.m05342 single-strand DNA endonuclease, putative
           similar to single-strand DNA endonuclease-1 [Oryza
           sativa (japonica cultivar-group)]
           gi|16923283|dbj|BAB72003
          Length = 337

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 439 RIRSTGRKLCRSP-KNKPHVRPTICKSRLGTKPL 341
           ++ S G      P K+K  VRP++C S+ GT PL
Sbjct: 255 KVASEGLSFAEKPRKSKKQVRPSVC-SKKGTLPL 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,864,017
Number of Sequences: 28952
Number of extensions: 286221
Number of successful extensions: 722
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)