Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060394.seq
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...   102   4e-23
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...    94   1e-20
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   3.3  
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe...    26   4.3  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   7.5  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    25   10.0 

>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score =  102 bits (244), Expect = 4e-23
 Identities = 49/85 (57%), Positives = 62/85 (72%)
 Frame = +3

Query: 255 ALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSK 434
           ALE+RD  K+++ GKGVL A+ N+N +IAP + KANL+VT Q+  DE +LKLDGTENKSK
Sbjct: 46  ALEMRDGDKTKWGGKGVLKAVGNVNNIIAPAVVKANLDVTDQKAADEFLLKLDGTENKSK 105

Query: 435 LGANAILGVSLXXXXXXXXXXNVPL 509
           LGANAILGVS+           +PL
Sbjct: 106 LGANAILGVSMAICRAGAAQKKLPL 130



 Score = 70.9 bits (166), Expect = 1e-13
 Identities = 33/47 (70%), Positives = 38/47 (80%)
 Frame = +1

Query: 121 MVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHELL 261
           M I+ + ARQI+DSRGNPTVEVDL TE G+ RA VPSGASTG+ E L
Sbjct: 1   MAIQKVFARQIYDSRGNPTVEVDLTTETGIHRAIVPSGASTGIWEAL 47


>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score = 93.9 bits (223), Expect = 1e-20
 Identities = 43/85 (50%), Positives = 60/85 (70%)
 Frame = +3

Query: 255 ALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSK 434
           A ELRDN K+++ GKGV  A+ N+N +I P L K+++++T QR IDE M+KLDGT +KSK
Sbjct: 47  AKELRDNDKNKWGGKGVTIAVHNVNNIIGPALVKSDIKITDQRGIDEFMIKLDGTNDKSK 106

Query: 435 LGANAILGVSLXXXXXXXXXXNVPL 509
           LGAN+I+GVS+           +PL
Sbjct: 107 LGANSIVGVSMAVARAAAAFLKIPL 131



 Score = 64.1 bits (149), Expect = 1e-11
 Identities = 30/43 (69%), Positives = 35/43 (81%)
 Frame = +1

Query: 127 IKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHE 255
           I+ I +R I+DSRGNPTVEV+L TELG FR+ VPSGASTG  E
Sbjct: 4   IQKIYSRSIYDSRGNPTVEVELTTELGTFRSMVPSGASTGEWE 46


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 428 FVLSAIQLKHEFINLSLLGYFKVGFG 351
           F +S+I+ KH++IN+    Y  +G G
Sbjct: 113 FSISSIKTKHDYINIIKKHYVSLGVG 138


>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +3

Query: 270 DNIKSEY-HGKGVLTAIKNINELIAPELTKANLEVTQQRE-IDELMLKLDGTENKSK 434
           D++K E    KG +T +KN  + +  E T    EVT  ++ I +L  K+D  + +++
Sbjct: 225 DSVKGEMAEMKGEMTIMKNDIDSVKGETTTLKGEVTAMKDSISQLDRKIDLLDQRTE 281


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 154 FDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEL 258
           F     PTV VDL     L RA  P   STG + +
Sbjct: 528 FSRYNQPTVSVDLRNSSILRRAQEPVNGSTGENHI 562


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 467 SCC*GWCCQEE 499
           SCC G CC+EE
Sbjct: 491 SCCGGHCCKEE 501


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,712
Number of Sequences: 5004
Number of extensions: 34674
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)