Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060394.seq
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877... 90 1e-18
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 69 2e-12
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 68 6e-12
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 66 1e-11
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 43 1e-04
10_08_0039 - 14355746-14355772,14356713-14356772,14356873-143569... 30 1.4
04_03_1005 + 21646323-21646403,21646724-21646906,21648014-216481... 28 4.4
11_01_0660 + 5382460-5382764,5383854-5384348,5384454-5384541,538... 27 7.7
>09_03_0117 -
12486672-12486818,12487438-12487488,12487583-12487729,
12488037-12488354,12488450-12488604,12488941-12489248,
12490644-12491038
Length = 506
Score = 90.2 bits (214), Expect = 1e-18
Identities = 47/85 (55%), Positives = 58/85 (68%)
Frame = +3
Query: 255 ALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSK 434
ALELRD + Y GKGVL A++NINE+IAP+L ++V Q ++D +ML +DGT NKSK
Sbjct: 95 ALELRDGDGAAYGGKGVLNAVRNINEVIAPKLV--GVDVRNQSDVDAIMLDIDGTPNKSK 152
Query: 435 LGANAILGVSLXXXXXXXXXXNVPL 509
LGANAILGVSL VPL
Sbjct: 153 LGANAILGVSLSVCRAGAGAKEVPL 177
Score = 67.3 bits (157), Expect = 8e-12
Identities = 34/47 (72%), Positives = 40/47 (85%), Gaps = 1/47 (2%)
Frame = +1
Query: 124 VIKSIKARQIFDSRGNPTVEVDLVTELG-LFRAAVPSGASTGVHELL 261
V++SI+ARQI DSRGNPTVEVDLV G L R+AVPSGASTG++E L
Sbjct: 50 VVRSIRARQIVDSRGNPTVEVDLVAGDGRLHRSAVPSGASTGIYEAL 96
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 464 LSCC*GWCCQEECSAYKHLADLAGNNDIVLP 556
LS C +E YKH+ +LAG ++V+P
Sbjct: 163 LSVCRAGAGAKEVPLYKHIQELAGTKELVMP 193
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 69.3 bits (162), Expect = 2e-12
Identities = 35/46 (76%), Positives = 39/46 (84%), Gaps = 1/46 (2%)
Frame = +1
Query: 127 IKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHELL 261
I+S+KARQIFDSRGNPTVEVD+ G F RAAVPSGASTGV+E L
Sbjct: 5 IQSVKARQIFDSRGNPTVEVDICCSDGTFARAAVPSGASTGVYEAL 50
Score = 66.9 bits (156), Expect = 1e-11
Identities = 44/97 (45%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Frame = +3
Query: 255 ALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELML-KLDGTEN-- 425
ALELRD S+Y GKGVL A+ N+N +I P L + T+Q ID M+ +LDGT+N
Sbjct: 49 ALELRDG-GSDYLGKGVLKAVDNVNSIIGPAL--IGKDPTEQTVIDNFMVQQLDGTKNEW 105
Query: 426 ---KSKLGANAILGVSLXXXXXXXXXXNVPLTSTWLI 527
K KLGANAIL VSL +PL ++I
Sbjct: 106 GWCKQKLGANAILAVSLALCKAGAIIKKIPLYQEFMI 142
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 67.7 bits (158), Expect = 6e-12
Identities = 35/46 (76%), Positives = 38/46 (82%), Gaps = 1/46 (2%)
Frame = +1
Query: 127 IKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHELL 261
I S+KARQIFDSRGNPTVEVD+ G F RAAVPSGASTGV+E L
Sbjct: 5 IVSVKARQIFDSRGNPTVEVDVCCSDGTFARAAVPSGASTGVYEAL 50
Score = 65.3 bits (152), Expect = 3e-11
Identities = 43/91 (47%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Frame = +3
Query: 255 ALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELML-KLDGTEN-- 425
ALELRD S+Y GKGV A+ N+N +IAP L + T Q E+D M+ +LDGT+N
Sbjct: 49 ALELRDG-GSDYLGKGVSKAVDNVNSVIAPAL--IGKDPTSQAELDNFMVQQLDGTKNEW 105
Query: 426 ---KSKLGANAILGVSLXXXXXXXXXXNVPL 509
K KLGANAIL VSL +PL
Sbjct: 106 GWCKQKLGANAILAVSLAICKAGAIIKKIPL 136
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 464 LSCC*GWCCQEECSAYKHLADLAGNNDIVLP 556
L+ C ++ Y+H+A+LAGN +VLP
Sbjct: 122 LAICKAGAIIKKIPLYQHIANLAGNKQLVLP 152
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 66.5 bits (155), Expect = 1e-11
Identities = 33/50 (66%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Frame = +1
Query: 115 LKMVIKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHELL 261
+ + I+S+KARQIFDSRGNPTVEVD+ G F R AVPSGASTG++E L
Sbjct: 1 MAVTIQSVKARQIFDSRGNPTVEVDVGLSDGSFARGAVPSGASTGIYEAL 50
Score = 65.7 bits (153), Expect = 2e-11
Identities = 43/91 (47%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Frame = +3
Query: 255 ALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELML-KLDGTEN-- 425
ALELRD S+Y GKGVL A+ N+N +I P L + T+Q +ID M+ +LDGT N
Sbjct: 49 ALELRDG-GSDYLGKGVLKAVSNVNTIIGPAL--IGKDPTEQVDIDNFMVQQLDGTSNNW 105
Query: 426 ---KSKLGANAILGVSLXXXXXXXXXXNVPL 509
K KLGANAIL VSL +PL
Sbjct: 106 GWCKQKLGANAILAVSLAVCKAGAMVKKIPL 136
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/82 (28%), Positives = 44/82 (53%)
Frame = +3
Query: 264 LRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGA 443
+RD K + + V A++ IN+ ++ L ++ QQ +ID+ ++ LD +K+++G
Sbjct: 93 VRDAEKRKLLARAVADAVRVINDKVSEALV--GMDPQQQSQIDQAIMDLDKAHHKAEIGV 150
Query: 444 NAILGVSLXXXXXXXXXXNVPL 509
N++L VS+ VPL
Sbjct: 151 NSMLAVSIAACKAGAAEKEVPL 172
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = +1
Query: 124 VIKSIKARQIFDSRGNPTVEVDLVTELGLFRAA 222
VI S++ARQI D RG P VEV L T + RA+
Sbjct: 46 VITSVRARQILDGRGEPAVEVSLHTNKAVHRAS 78
>10_08_0039 -
14355746-14355772,14356713-14356772,14356873-14356944,
14357042-14357109,14357288-14357350,14357533-14357669,
14357950-14357987
Length = 154
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +1
Query: 40 PNLACKVQFC*IRITLNLRKSTSSVLKMVIKSIKARQIFDSRGNPTVEV 186
P+++C + + I L LRKST +V +++ ++ RQI + G T +
Sbjct: 79 PDISCMARRAKLTINLKLRKSTINVEQLI--HVRLRQILNFMGGKTAYI 125
>04_03_1005 +
21646323-21646403,21646724-21646906,21648014-21648133,
21648458-21648649,21648848-21649153,21650004-21650714
Length = 530
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = -1
Query: 75 YLTKLHLTSKVWRNLMIWICCWL 7
Y HL VW L W C WL
Sbjct: 94 YFWAAHLAGPVWGPLASWCCAWL 116
>11_01_0660 +
5382460-5382764,5383854-5384348,5384454-5384541,
5384629-5384691,5384965-5385125,5385214-5385289,
5385395-5385454,5385555-5385662,5385746-5385982,
5386192-5386307,5386756-5386813
Length = 588
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 267 RDNIKSEYHGKGVL--TAIKNINELIAPELTKANLEV 371
RD + + GKG + T+ ++++ L P+LT NL+V
Sbjct: 518 RDTFPTSFDGKGAMVQTSNRSLSPLRDPDLTMRNLQV 554
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,790,180
Number of Sequences: 37544
Number of extensions: 214903
Number of successful extensions: 499
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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