Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060394.seq
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29862| Best HMM Match : Enolase_N (HMM E-Value=6e-20)               71   6e-13
SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)                   29   2.6  
SB_27495| Best HMM Match : VWA (HMM E-Value=0)                         29   3.4  
SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)            29   3.4  
SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69)            28   4.5  
SB_825| Best HMM Match : EGF (HMM E-Value=5.6e-08)                     28   5.9  
SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)                       27   7.9  

>SB_29862| Best HMM Match : Enolase_N (HMM E-Value=6e-20)
          Length = 115

 Score = 70.9 bits (166), Expect = 6e-13
 Identities = 32/58 (55%), Positives = 42/58 (72%)
 Frame = +3

Query: 255 ALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENK 428
           ALELRD   S++ GKGV  A+ N+N +I P L   N++VT Q +ID +ML+LDGTENK
Sbjct: 57  ALELRDKDASKFLGKGVSQAVNNVNTIIGPALVSKNVDVTAQEDIDNMMLQLDGTENK 114



 Score = 35.1 bits (77), Expect = 0.039
 Identities = 15/19 (78%), Positives = 17/19 (89%)
 Frame = +1

Query: 205 GLFRAAVPSGASTGVHELL 261
           G FRAAVPSGASTG++E L
Sbjct: 40  GTFRAAVPSGASTGIYEAL 58


>SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)
          Length = 284

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 509 YKHLADLAGNNDIVLP 556
           YK++A LAGNN ++LP
Sbjct: 29  YKYIAGLAGNNQVILP 44


>SB_27495| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1064

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 452 DSISTQFGFVLSAIQLKHEFINLSLLGYFKVGFGKFRSNQFID 324
           + + T F      ++ +H F    + GY + GF KFRS Q +D
Sbjct: 633 EKLCTGFDVAERQLRKQHSFWFNDVCGYNQKGFRKFRSEQELD 675


>SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)
          Length = 870

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 309 TAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKS 431
           TA KN+ +  A ELT  N + TQ+ +  +L   L  TEN++
Sbjct: 679 TAKKNLEKARAAELTAVNQQATQREQ--QLTTLLQETENRN 717


>SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69)
          Length = 348

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 273 NIKSEYHGKGVLTAIKNINELIAPELTK--ANLEVTQQRE 386
           N+K+E+ G+    AI ++ EL+ P   +    L++TQ R+
Sbjct: 219 NLKAEHGGEAAADAISDLQELVTPAEREMLMKLKITQARQ 258


>SB_825| Best HMM Match : EGF (HMM E-Value=5.6e-08)
          Length = 316

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +3

Query: 309 TAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAIL 455
           T + +I E  A E+T+    V  +   D L+++++G EN+S+   N I+
Sbjct: 230 TGVGSIEE-DAAEITERLETVATRETTDLLLIRVEGLENRSRRNNNIII 277


>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 2538

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -2

Query: 284  TLDVISQFKSS*TPVDAPEGTAARNKPSSVTRSTSTVGLP 165
            T DV++   SS TPV A E T    +P     S   V  P
Sbjct: 2393 TKDVVNNLVSSKTPVTAEEATLIEEEPEKQPESAVPVERP 2432


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,864,511
Number of Sequences: 59808
Number of extensions: 259464
Number of successful extensions: 583
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)