BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV060394.seq (558 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z68318-8|CAH10783.1| 465|Caenorhabditis elegans Hypothetical pr... 91 7e-19 Z68318-3|CAD57704.1| 337|Caenorhabditis elegans Hypothetical pr... 91 7e-19 Z68318-2|CAA92692.1| 434|Caenorhabditis elegans Hypothetical pr... 91 7e-19 AL032631-9|CAA21575.2| 893|Caenorhabditis elegans Hypothetical ... 27 9.1 AF003386-8|AAB54262.2| 141|Caenorhabditis elegans Hypothetical ... 27 9.1 >Z68318-8|CAH10783.1| 465|Caenorhabditis elegans Hypothetical protein T21B10.2c protein. Length = 465 Score = 90.6 bits (215), Expect = 7e-19 Identities = 46/85 (54%), Positives = 56/85 (65%) Frame = +3 Query: 255 ALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSK 434 ALELRD K+ + GKGVL A+ NINE IAP L +VT Q++ID+ M+ LDG+ENK Sbjct: 77 ALELRDGDKAVHLGKGVLKAVSNINEKIAPALIAKGFDVTAQKDIDDFMMALDGSENKGN 136 Query: 435 LGANAILGVSLXXXXXXXXXXNVPL 509 LGANAILGVSL +PL Sbjct: 137 LGANAILGVSLAVAKAGAVHKGLPL 161 Score = 81.8 bits (193), Expect = 3e-16 Identities = 41/55 (74%), Positives = 44/55 (80%) Frame = +1 Query: 97 KSTSSVLKMVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHELL 261 KS S +M I I ARQI+DSRGNPTVEVDL TE G+FRAAVPSGASTGVHE L Sbjct: 24 KSNLSGQRMPITKIHARQIYDSRGNPTVEVDLFTEKGVFRAAVPSGASTGVHEAL 78 >Z68318-3|CAD57704.1| 337|Caenorhabditis elegans Hypothetical protein T21B10.2b protein. Length = 337 Score = 90.6 bits (215), Expect = 7e-19 Identities = 46/85 (54%), Positives = 56/85 (65%) Frame = +3 Query: 255 ALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSK 434 ALELRD K+ + GKGVL A+ NINE IAP L +VT Q++ID+ M+ LDG+ENK Sbjct: 46 ALELRDGDKAVHLGKGVLKAVSNINEKIAPALIAKGFDVTAQKDIDDFMMALDGSENKGN 105 Query: 435 LGANAILGVSLXXXXXXXXXXNVPL 509 LGANAILGVSL +PL Sbjct: 106 LGANAILGVSLAVAKAGAVHKGLPL 130 Score = 78.6 bits (185), Expect = 3e-15 Identities = 38/47 (80%), Positives = 40/47 (85%) Frame = +1 Query: 121 MVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHELL 261 M I I ARQI+DSRGNPTVEVDL TE G+FRAAVPSGASTGVHE L Sbjct: 1 MPITKIHARQIYDSRGNPTVEVDLFTEKGVFRAAVPSGASTGVHEAL 47 >Z68318-2|CAA92692.1| 434|Caenorhabditis elegans Hypothetical protein T21B10.2a protein. Length = 434 Score = 90.6 bits (215), Expect = 7e-19 Identities = 46/85 (54%), Positives = 56/85 (65%) Frame = +3 Query: 255 ALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSK 434 ALELRD K+ + GKGVL A+ NINE IAP L +VT Q++ID+ M+ LDG+ENK Sbjct: 46 ALELRDGDKAVHLGKGVLKAVSNINEKIAPALIAKGFDVTAQKDIDDFMMALDGSENKGN 105 Query: 435 LGANAILGVSLXXXXXXXXXXNVPL 509 LGANAILGVSL +PL Sbjct: 106 LGANAILGVSLAVAKAGAVHKGLPL 130 Score = 78.6 bits (185), Expect = 3e-15 Identities = 38/47 (80%), Positives = 40/47 (85%) Frame = +1 Query: 121 MVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHELL 261 M I I ARQI+DSRGNPTVEVDL TE G+FRAAVPSGASTGVHE L Sbjct: 1 MPITKIHARQIYDSRGNPTVEVDLFTEKGVFRAAVPSGASTGVHEAL 47 >AL032631-9|CAA21575.2| 893|Caenorhabditis elegans Hypothetical protein Y106G6H.7 protein. Length = 893 Score = 27.1 bits (57), Expect = 9.1 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +3 Query: 273 NIKSEYHG-KGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLD 413 N + H + L +K++ EL +L K E QQ+ + E+M KL+ Sbjct: 94 NCRERIHNVRNALHTVKSLLELRRDDLKKLWHENAQQKSVCEIMAKLE 141 >AF003386-8|AAB54262.2| 141|Caenorhabditis elegans Hypothetical protein F59E12.3 protein. Length = 141 Score = 27.1 bits (57), Expect = 9.1 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%) Frame = +1 Query: 100 STSSVLKMVIKSIKARQIFDSR--GNPT--VEVDLVTELGLFRAAVPSGASTGV 249 S ++ K+ KS R + + G+P+ + ++LVT L +FR+ VP GV Sbjct: 32 SFGAIFKVTEKSTGTRLVLKAELPGSPSNDLRIELVTMLRVFRSYVPEVTDKGV 85 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,099,225 Number of Sequences: 27780 Number of extensions: 194884 Number of successful extensions: 503 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 487 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 503 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1144922904 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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