Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060394.seq
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68318-8|CAH10783.1|  465|Caenorhabditis elegans Hypothetical pr...    91   7e-19
Z68318-3|CAD57704.1|  337|Caenorhabditis elegans Hypothetical pr...    91   7e-19
Z68318-2|CAA92692.1|  434|Caenorhabditis elegans Hypothetical pr...    91   7e-19
AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical ...    27   9.1  
AF003386-8|AAB54262.2|  141|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z68318-8|CAH10783.1|  465|Caenorhabditis elegans Hypothetical
           protein T21B10.2c protein.
          Length = 465

 Score = 90.6 bits (215), Expect = 7e-19
 Identities = 46/85 (54%), Positives = 56/85 (65%)
 Frame = +3

Query: 255 ALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSK 434
           ALELRD  K+ + GKGVL A+ NINE IAP L     +VT Q++ID+ M+ LDG+ENK  
Sbjct: 77  ALELRDGDKAVHLGKGVLKAVSNINEKIAPALIAKGFDVTAQKDIDDFMMALDGSENKGN 136

Query: 435 LGANAILGVSLXXXXXXXXXXNVPL 509
           LGANAILGVSL           +PL
Sbjct: 137 LGANAILGVSLAVAKAGAVHKGLPL 161



 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 41/55 (74%), Positives = 44/55 (80%)
 Frame = +1

Query: 97  KSTSSVLKMVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHELL 261
           KS  S  +M I  I ARQI+DSRGNPTVEVDL TE G+FRAAVPSGASTGVHE L
Sbjct: 24  KSNLSGQRMPITKIHARQIYDSRGNPTVEVDLFTEKGVFRAAVPSGASTGVHEAL 78


>Z68318-3|CAD57704.1|  337|Caenorhabditis elegans Hypothetical
           protein T21B10.2b protein.
          Length = 337

 Score = 90.6 bits (215), Expect = 7e-19
 Identities = 46/85 (54%), Positives = 56/85 (65%)
 Frame = +3

Query: 255 ALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSK 434
           ALELRD  K+ + GKGVL A+ NINE IAP L     +VT Q++ID+ M+ LDG+ENK  
Sbjct: 46  ALELRDGDKAVHLGKGVLKAVSNINEKIAPALIAKGFDVTAQKDIDDFMMALDGSENKGN 105

Query: 435 LGANAILGVSLXXXXXXXXXXNVPL 509
           LGANAILGVSL           +PL
Sbjct: 106 LGANAILGVSLAVAKAGAVHKGLPL 130



 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 38/47 (80%), Positives = 40/47 (85%)
 Frame = +1

Query: 121 MVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHELL 261
           M I  I ARQI+DSRGNPTVEVDL TE G+FRAAVPSGASTGVHE L
Sbjct: 1   MPITKIHARQIYDSRGNPTVEVDLFTEKGVFRAAVPSGASTGVHEAL 47


>Z68318-2|CAA92692.1|  434|Caenorhabditis elegans Hypothetical
           protein T21B10.2a protein.
          Length = 434

 Score = 90.6 bits (215), Expect = 7e-19
 Identities = 46/85 (54%), Positives = 56/85 (65%)
 Frame = +3

Query: 255 ALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSK 434
           ALELRD  K+ + GKGVL A+ NINE IAP L     +VT Q++ID+ M+ LDG+ENK  
Sbjct: 46  ALELRDGDKAVHLGKGVLKAVSNINEKIAPALIAKGFDVTAQKDIDDFMMALDGSENKGN 105

Query: 435 LGANAILGVSLXXXXXXXXXXNVPL 509
           LGANAILGVSL           +PL
Sbjct: 106 LGANAILGVSLAVAKAGAVHKGLPL 130



 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 38/47 (80%), Positives = 40/47 (85%)
 Frame = +1

Query: 121 MVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHELL 261
           M I  I ARQI+DSRGNPTVEVDL TE G+FRAAVPSGASTGVHE L
Sbjct: 1   MPITKIHARQIYDSRGNPTVEVDLFTEKGVFRAAVPSGASTGVHEAL 47


>AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical
           protein Y106G6H.7 protein.
          Length = 893

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 273 NIKSEYHG-KGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLD 413
           N +   H  +  L  +K++ EL   +L K   E  QQ+ + E+M KL+
Sbjct: 94  NCRERIHNVRNALHTVKSLLELRRDDLKKLWHENAQQKSVCEIMAKLE 141


>AF003386-8|AAB54262.2|  141|Caenorhabditis elegans Hypothetical
           protein F59E12.3 protein.
          Length = 141

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +1

Query: 100 STSSVLKMVIKSIKARQIFDSR--GNPT--VEVDLVTELGLFRAAVPSGASTGV 249
           S  ++ K+  KS   R +  +   G+P+  + ++LVT L +FR+ VP     GV
Sbjct: 32  SFGAIFKVTEKSTGTRLVLKAELPGSPSNDLRIELVTMLRVFRSYVPEVTDKGV 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,099,225
Number of Sequences: 27780
Number of extensions: 194884
Number of successful extensions: 503
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)