Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060393.seq
         (657 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   0.96 
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   2.9  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   6.7  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   6.7  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   8.9  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   8.9  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.9  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 272 CDEEMTGPRPCCRPEPGTL 216
           CDE +  P  CC+  PG L
Sbjct: 94  CDEPVHRPGRCCKTCPGDL 112


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 460 PFAVRNVRFGTALGTNSPSKTPSGPDSRTP 549
           P  + N R        SPS T S P+ R+P
Sbjct: 268 PLDLYNFRVPQHQVLQSPSSTSSSPEPRSP 297


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 312 SWYSSREAGARHQQTMRLWFP 374
           SWY+    GA+     ++W P
Sbjct: 27  SWYAGYHQGAQMGPEQQMWEP 47


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 312 SWYSSREAGARHQQTMRLWFP 374
           SWY+    GA+     ++W P
Sbjct: 27  SWYAGYHQGAQMGPEQQMWEP 47


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 193 CRCAEGGRSVPG 228
           C C+E G ++PG
Sbjct: 173 CFCSEDGTTIPG 184


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/25 (28%), Positives = 9/25 (36%)
 Frame = -3

Query: 568 PMGSPQ*ESESPAQRVSSKASWCPE 494
           P  +P  +   P Q       W PE
Sbjct: 415 PPSTPSADGSKPVQTTPKPGQWVPE 439


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 279 RNLHATSRGAQSWYSSR 329
           RNL+ T R  + W+ +R
Sbjct: 278 RNLNLTERQVKIWFQNR 294


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,309
Number of Sequences: 336
Number of extensions: 2962
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)