Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060393.seq
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    64   2e-11
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    28   1.0  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    27   2.4  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   3.1  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    27   3.1  
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...    26   5.5  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   7.3  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   7.3  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    25   7.3  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   9.6  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    25   9.6  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 34/84 (40%), Positives = 49/84 (58%)
 Frame = +1

Query: 250 GPVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISV 429
           G V+S++   G    R  AL AG+P+      +N++C SG ++ +  AQ I+TG A+I V
Sbjct: 56  GNVVSANL--GQNPARQCALGAGLPRSIVCTTVNKVCASGMKATILGAQTIMTGNAEIVV 113

Query: 430 AGGVENMSQAPFAVRNVRFGTALG 501
           AGG E+MS AP+     RFG   G
Sbjct: 114 AGGTESMSNAPYYAPKNRFGAKYG 137



 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 23/51 (45%), Positives = 34/51 (66%)
 Frame = +2

Query: 101 IFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVG 253
           ++IV A RTP G+FGG F +  AT+L +IA  GAL+   + P+ VD + +G
Sbjct: 6   VYIVSAVRTPMGSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMG 56



 Score = 32.3 bits (70), Expect = 0.063
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 534 GLSDSYCGLPMGMTAEKLGAQFGITR--DESLTITLYNR 644
           GLSD+Y GLPMG  AE    +  I R   ++  I+ Y R
Sbjct: 149 GLSDAYDGLPMGNAAELCAEEHSIDRASQDAFAISSYKR 187


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 478 VRFGTALGTNSPSKTPSGPDSRTPTAD 558
           VR GT+LG  SPS+  S   SRT T +
Sbjct: 355 VRPGTSLGVRSPSRIQSTLSSRTTTGN 381


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/52 (21%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 423 DLGCAGQNVLSAVHDRLE-TRAA*SVDAEHRLLLRNTSFERRVTWRVDSVSL 271
           D       +   V + ++ T+ + + ++   LLL N+  + +++W +D+V L
Sbjct: 177 DFNLDDPQIFDVVSEHIDITQTSDAPNSNRNLLLNNSMLQEKISWYLDTVEL 228


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 21/61 (34%), Positives = 24/61 (39%)
 Frame = +3

Query: 414  SQDLSSGGSREHVASALRGQKREVRHGSGHQLAFEDTLWAGLSDSYCGLPMGMTAEKLGA 593
            SQ  SSG  R H     RG  R    G G    F  + W+   D Y  L  G+   K G 
Sbjct: 1275 SQRPSSG--RMHGRDMNRGDSR--MGGRGSNPPFSSSDWSNNKDGYARLGQGIRGLKSGT 1330

Query: 594  Q 596
            Q
Sbjct: 1331 Q 1331


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 128 PFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMV 247
           P G  G    + + T+ Q I  +  L    V PAQ+DS++
Sbjct: 270 PSGPMGMKTGSVNDTQSQQITLMNVLASQNVPPAQIDSIM 309


>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +1

Query: 184 DSHCRCAEGGRSVPGSGRQHGRGPVISSSQTDGIYTPRHAALKAGIPQEKPVLGINR 354
           DS C  A G R+  G GR  G   +  S+++   + P +  ++ G  Q +P+  + R
Sbjct: 51  DSECVQAFGLRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVG--QAEPIQKVAR 105


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 166 RDRTADDSHCRCAEGGRSVPGSGRQHGRGPVISSS 270
           R   +D S  R      +V  SGR+HGR P+ S++
Sbjct: 495 RGEVSDSSIDRKPSSFITVTTSGREHGRTPIRSNT 529


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -1

Query: 174 SVADVLRKTPPKVPNGVLLAPTMKIPLTEADMIQNYTYPVNVELKY 37
           SV+  +R     +PN     P    P  +A+ + N ++PV+ +L +
Sbjct: 755 SVSSNVRPINGSIPNAQPSVPGQAQPAAKANSVGNTSFPVDSKLAF 800


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +2

Query: 158 NTSATELQTIATVGALKEAGVSPAQVDSMVVGQSSLHHKLTESTRHVTRRSKLVFLKRS 334
           NTS+T+   + ++   +     P Q+DS+   +     ++ E  R  +RR    FL R+
Sbjct: 630 NTSSTQPSQVDSLVPTQLDSTIPTQIDSVQRNKDQDDEEILEERRE-SRRDSKTFLSRT 687


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 214 RSVPGSGRQHGRGPVISSSQTDGIYTPRHAALKAG-IPQEKPVLGINRLCGSGFQSIVNS 390
           RS+P S +  G  P  S++Q    + P   A   G +PQ  P+     L G  +  + NS
Sbjct: 313 RSIPSSPKTEG-AP--SNAQ----FRPSLPATPNGSVPQSNPLYDTTGLNGGQYPVVQNS 365

Query: 391 AQDIL 405
           AQ +L
Sbjct: 366 AQPLL 370


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = +1

Query: 52  VNWIGIILNHVCF 90
           +NWI I+L+++C+
Sbjct: 421 INWINILLSYICY 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,286
Number of Sequences: 5004
Number of extensions: 49150
Number of successful extensions: 132
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)