Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060393.seq
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 60 2e-09
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 59 3e-09
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 50 2e-06
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 48 9e-06
03_02_0812 - 11439258-11439409,11439537-11439612,11439860-114400... 31 0.61
03_02_0167 - 6088818-6089870 31 0.81
10_08_0295 - 16581014-16583071 31 1.1
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 30 1.4
10_02_0127 + 5555226-5555446,5555475-5555500,5555702-5555790,555... 30 1.9
02_04_0553 - 23808328-23809530 30 1.9
09_02_0415 - 8835344-8835467,8835543-8835946 29 2.5
06_01_1074 - 8765183-8765278,8765657-8765749,8766520-8766600,876... 29 3.3
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 29 3.3
02_05_0052 - 25433204-25434151 29 3.3
02_04_0534 + 23725051-23726253 29 4.3
02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023 29 4.3
12_02_0824 + 23469147-23469848 28 5.7
05_01_0568 + 4973031-4973161,4973514-4974321,4974394-4974690 28 7.5
03_02_0198 + 6344952-6347483 28 7.5
08_02_1553 + 27835320-27835364,27836853-27836966,27837062-278374... 27 9.9
08_01_0661 - 5708088-5708131,5708217-5710048,5710527-5710625,571... 27 9.9
06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081,873... 27 9.9
02_01_0687 - 5118774-5119412,5120359-5120424,5120636-5120690,512... 27 9.9
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/69 (42%), Positives = 42/69 (60%)
Frame = +1
Query: 295 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMSQAPFAVR 474
R AAL AG+P P +N++C SG ++++ +AQ I G + VAGG+E+MS AP V
Sbjct: 80 RQAALGAGLPDTVPCTTVNKVCSSGMKAVMLAAQTIQLGMHDVVVAGGMESMSNAPKYVA 139
Query: 475 NVRFGTALG 501
R G+ G
Sbjct: 140 AARRGSRFG 148
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +2
Query: 95 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVG 253
+ + IVG RTP G G + AT+L ++A AL+ A V PA V + +G
Sbjct: 15 RDVCIVGVARTPIGALLGSLSSLPATKLGSVAIQAALRRANVEPALVQEVFMG 67
Score = 37.1 bits (82), Expect = 0.012
Identities = 24/76 (31%), Positives = 36/76 (47%)
Frame = +3
Query: 426 SSGGSREHVASALRGQKREVRHGSGHQLAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGI 605
S + ++VA+A RG + GH + + L GL D Y PMGM AE Q I
Sbjct: 130 SMSNAPKYVAAARRGSR------FGHDVLIDGMLKDGLWDVYNDFPMGMCAELCADQHSI 183
Query: 606 TRDESLTITLYNRNRS 653
+R+E + + R+
Sbjct: 184 SREEQDLYAIQSNERA 199
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 59.3 bits (137), Expect = 3e-09
Identities = 30/69 (43%), Positives = 41/69 (59%)
Frame = +1
Query: 295 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMSQAPFAVR 474
R AAL AGIP +N++C SG ++ + +AQ IL G I VAGG+E+MS AP +
Sbjct: 74 RQAALGAGIPNTVVCSAVNKVCASGMKATMFAAQSILLGINDIVVAGGMESMSNAPKYIA 133
Query: 475 NVRFGTALG 501
R G+ G
Sbjct: 134 EARKGSRFG 142
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/53 (43%), Positives = 30/53 (56%)
Frame = +2
Query: 95 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVG 253
+ + +VG RTP G F G + SAT+L +IA ALK A V PA V + G
Sbjct: 9 RDVCVVGVARTPMGGFLGALSSLSATKLGSIAIEAALKRANVDPALVQEVFFG 61
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +3
Query: 420 DLSSGGSREHVASALRGQKREVRHGS--GHQLAFEDTLWAGLSDSYCGLPMGMTAEKLGA 593
D+ G E +++A + E R GS GH + L GL D Y MG AE
Sbjct: 115 DIVVAGGMESMSNAPK-YIAEARKGSRFGHDTLVDGMLKDGLWDVYGDFAMGNCAELCAD 173
Query: 594 QFGITRDESLTITLYNRNR 650
+TR++ + + R
Sbjct: 174 NHALTREDQDAYAIQSNER 192
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +1
Query: 295 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMS 453
R AA AG P P++ +NR C SG Q++ N A +I G I +A G+E+M+
Sbjct: 116 RMAAFYAGFPDTVPLMTVNRQCSSGLQAVANVASNIKAGLYDIGIAAGLESMT 168
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 552 CGLPMGMTAEKLGAQFGITRDE 617
C LPMG+T+E + +FGITR E
Sbjct: 191 CLLPMGLTSENVAKRFGITRME 212
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 47.6 bits (108), Expect = 9e-06
Identities = 22/53 (41%), Positives = 31/53 (58%)
Frame = +1
Query: 295 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMS 453
R AA AG+P+ PV +NR C SG Q++ + A I G I + G+E+MS
Sbjct: 114 RAAAFYAGVPENVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMS 166
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 552 CGLPMGMTAEKLGAQFGITRDE 617
C LPMG+T+E + ++G+TR E
Sbjct: 189 CLLPMGITSENVAHRYGVTRQE 210
>03_02_0812 -
11439258-11439409,11439537-11439612,11439860-11440076,
11440150-11440350,11440673-11440872,11440955-11441075,
11441596-11441636,11441714-11441822,11442037-11442281,
11442382-11442496,11442970-11443064,11444279-11444535,
11444780-11444999,11445473-11445556
Length = 710
Score = 31.5 bits (68), Expect = 0.61
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 224 PAQVDSMVVGQSSLHHKLTESTRH 295
P +DS V+ QSS+HHKL S H
Sbjct: 112 PDTLDSSVIEQSSMHHKLNPSETH 135
>03_02_0167 - 6088818-6089870
Length = 350
Score = 31.1 bits (67), Expect = 0.81
Identities = 23/75 (30%), Positives = 38/75 (50%)
Frame = +3
Query: 291 ATSRGAQSWYSSREAGARHQQTMRLWFPIDREQRSGHFDRRSQDLSSGGSREHVASALRG 470
ATS+G + SS + GAR ++T+RL+ + + R QDL G +A +R
Sbjct: 246 ATSQGVEEEGSSYDVGARGKRTVRLFVAAEGKPMYA-AGRGMQDLLESGGGLPLAVTVRA 304
Query: 471 QKREVRHGSGHQLAF 515
+ R GS +L++
Sbjct: 305 RSRYRMVGSLVRLSY 319
>10_08_0295 - 16581014-16583071
Length = 685
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Frame = -2
Query: 509 ELVPRAVPNLTFLTAKGACDMFSTPPATEILAAPVKMS*ALFTI------DWKP-EPHSL 351
+L+PR V + F G TPP + +A P + + DW P PH
Sbjct: 177 DLLPRIVISTFFPPEAGRVTSGITPPLPDEIAPPPRGRLPHVIVHLDEMEDWTPGPPHPP 236
Query: 350 LMPSTGFS*GIPALSAA*RGV*IPSV 273
PS+G S G+P+ ++ G IP+V
Sbjct: 237 CSPSSGVS-GLPSSDSSDSGGPIPTV 261
>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 312 SWYSSREAGARHQQTMRLWFPIDREQRSGHFDRRSQDLSSGGSRE 446
SWYSS AG ++ F I R G ++R++ + GG RE
Sbjct: 1353 SWYSSNSAGTQN-------FTIAGSSRPGEWNRKNNNRGQGGGRE 1390
>10_02_0127 +
5555226-5555446,5555475-5555500,5555702-5555790,
5558112-5558843
Length = 355
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 316 GIPQEKPVLGIN-RLCGSGFQSIVNSAQDILTGAAKISVAGGVENMSQAPFAVRNVR 483
G+P E P + R C S S A++ A++ G SQA +AV N +
Sbjct: 244 GVPGEAPAIAAEIRDCASASSSASGHAKETAAELARLDAMGDAAKGSQARWAVSNAK 300
>02_04_0553 - 23808328-23809530
Length = 400
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -2
Query: 518 FEGELVPRAVPNLTFLTAKGACDMFSTPPATEILAAP 408
F G P+ V TFL A GA + PPA + AP
Sbjct: 36 FSGGATPQMVDTDTFLRAIGALPPLAPPPAAPLAPAP 72
>09_02_0415 - 8835344-8835467,8835543-8835946
Length = 175
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +3
Query: 363 LWFPIDREQRSGHFDRRSQDLSSGGSREH---VASALRGQKREVRHGSGHQLAFEDTLWA 533
LWF ++ R G + ++ GG ++ VA ++ E R GSG + F +WA
Sbjct: 104 LWFSMEESSREGGWWPPARADGDGGRKKMRGGVAQCQFSRRMEKRRGSGSWVGFCGAIWA 163
>06_01_1074 -
8765183-8765278,8765657-8765749,8766520-8766600,
8767092-8767173,8767261-8767313,8767391-8767456,
8767534-8767697,8768028-8768295
Length = 300
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = +1
Query: 166 RDRTADDSHCRCAEGGRSVPGSGRQHGRGPVISSSQTDGIYTPRHAALKAGIPQEKPVL 342
R A S RC+ G P R+ + P S G RH A + G+P + VL
Sbjct: 25 RSPPASGSLVRCSSSGNGAPRDHRRRWQSPAAGSP---GRVYQRHRAQQYGVPSRRWVL 80
>03_06_0454 +
34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 292 PRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILT 408
PR LK P+E I+R+C Q I++S Q I +
Sbjct: 249 PRTTKLKYRYPRESDHKNISRICREHLQEIISSQQKIFS 287
>02_05_0052 - 25433204-25434151
Length = 315
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +2
Query: 77 IMSASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVG 253
+ SA+ G+ + GT G+F N ++ ELQ I +G + G+SP Q +V G
Sbjct: 217 VTSAARGGVEVKEGDVVVAGT-DGLFDNVTSEELQRIVAMG--RALGLSPKQTADVVAG 272
>02_04_0534 + 23725051-23726253
Length = 400
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -2
Query: 518 FEGELVPRAVPNLTFLTAKGACDMFSTPPATEILAAP 408
F G P+ V TFL A GA + PPA + AP
Sbjct: 36 FSGGGTPQMVDTDTFLRAIGALPPLAPPPAAPLAPAP 72
>02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023
Length = 432
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 518 FEGELVPRAVPNLTFLTAKGACDMFSTPPATEILAAP 408
+ G P+ V TFL A GA + PPA + AP
Sbjct: 36 YSGGATPQMVDTDTFLRAIGALPPLAPPPAAPLAPAP 72
>12_02_0824 + 23469147-23469848
Length = 233
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 551 VGVRESG-PEGVFEGELVPRAVPNLTFLTAKGACDMFSTPPATEI 420
VG+R P G + G +VPR T+ G CD + PPAT +
Sbjct: 67 VGLRSLNLPAGFWSGRVVPR-----TWCRDGGRCDTGNAPPATVV 106
>05_01_0568 + 4973031-4973161,4973514-4974321,4974394-4974690
Length = 411
Score = 27.9 bits (59), Expect = 7.5
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = +1
Query: 202 AEGGRSVPGSGRQHGRGPVISSSQTDGIYTP--RHAALKAGIPQEKPVLGINRLCGSGFQ 375
A G R + HG GPV ++ + ++ P R AG PV R G F
Sbjct: 208 APGRRGPVFAAGFHGGGPVFAAGRGGPVFAPGRRGPVFAAGFHGGGPVFAAGR-GGPVFA 266
Query: 376 SIVNSAQDILTGAAKISVAG-GVE 444
+ ++ + G A +++AG GV+
Sbjct: 267 AGLHGGGPMAAGVAVVTLAGLGVD 290
>03_02_0198 + 6344952-6347483
Length = 843
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 229 SGRQHGRGPVISSSQTDGIYTPRHAALK 312
SGR++ P SS GIY P HA +K
Sbjct: 716 SGRRNSTAPSSSSEGGPGIYFPVHAVVK 743
>08_02_1553 +
27835320-27835364,27836853-27836966,27837062-27837457,
27837751-27837822,27837957-27838082,27838164-27838244,
27838364-27838558,27839018-27840013
Length = 674
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 330 EAGARHQQTMRLWFPIDREQRSGHFDRRSQDLSSGGSREHVASALRGQKR 479
+A AR + + + P+D R GH +G R V++A + Q+R
Sbjct: 394 KAAARARASSSVLRPVDARHRGGHDAGDLSSSGNGSVRSSVSAAAKEQRR 443
>08_01_0661 -
5708088-5708131,5708217-5710048,5710527-5710625,
5711015-5711508,5711579-5711632,5712597-5712683,
5712684-5712776
Length = 900
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 202 AEGGRSVPGSGRQHGRGPVISSSQTD 279
A GG SVPG+G HG+ S S D
Sbjct: 197 AAGGPSVPGTGNGHGQSSGSSDSCRD 222
>06_01_1069 +
8731567-8731632,8732120-8732281,8733028-8733081,
8733557-8733630,8733706-8733786,8734902-8735079,
8735336-8735506,8736113-8736202,8736284-8736331,
8736447-8736562,8736655-8736733,8737101-8737223
Length = 413
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 228 AGDTPASFSAPTVAIVCSSVADVLRKTPPKVPNGVLLAPTMK 103
A TPA+ + P A+ SS ADV + + +G L T++
Sbjct: 129 ASATPAAAATPAAAVTASSDADVYSQAASNLVSGSNLEQTIQ 170
>02_01_0687 -
5118774-5119412,5120359-5120424,5120636-5120690,
5120795-5121354
Length = 439
Score = 27.5 bits (58), Expect = 9.9
Identities = 28/90 (31%), Positives = 41/90 (45%)
Frame = +3
Query: 321 SSREAGARHQQTMRLWFPIDREQRSGHFDRRSQDLSSGGSREHVASALRGQKREVRHGSG 500
+ R+A + Q +R + +R+ R H S+ L G+ S GQ + + SG
Sbjct: 174 AERDAARQEYQHLRATYEYERKLRMDH----SESLQDDGA----PSLPVGQ---IAYDSG 222
Query: 501 HQLAFEDTLWAGLSDSYCGLPMGMTAEKLG 590
+ A T AGL DS G P G TA + G
Sbjct: 223 YGAAQGRTPPAGLGDSLSGNPAG-TAPRTG 251
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,245,571
Number of Sequences: 37544
Number of extensions: 425395
Number of successful extensions: 1572
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1572
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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