Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060393.seq
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   4e-10
SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   4e-07
SB_41352| Best HMM Match : MIB_HERC2 (HMM E-Value=3.1)                 36   0.022
SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.47 
SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)            31   0.62 
SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)                    30   1.4  
SB_55930| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    29   2.5  
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_19840| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_57607| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_52818| Best HMM Match : CUB (HMM E-Value=1.6e-23)                   28   5.8  
SB_19802| Best HMM Match : fn3 (HMM E-Value=0)                         28   7.7  
SB_17683| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_38719| Best HMM Match : TSC22 (HMM E-Value=1.1)                     28   7.7  

>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 32/71 (45%), Positives = 43/71 (60%)
 Frame = +1

Query: 250 GPVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISV 429
           G V+++ Q  G    R AA+ AGIP   P  G+N LCGSG +++    Q +  G + I V
Sbjct: 60  GQVLTAGQGQG--PARQAAIHAGIPACVPAYGVNMLCGSGLKAVALGYQAVAMGDSNIVV 117

Query: 430 AGGVENMSQAP 462
           AGG E+MSQAP
Sbjct: 118 AGGQESMSQAP 128



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +2

Query: 95  KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQ 256
           + + I  A RTP G+  G   +  A EL +I    AL  A +SP  V  +++GQ
Sbjct: 8   RDVIIACAVRTPVGSHNGDLSSLKAHELGSIVVKEALCRASISPCDVSEVILGQ 61



 Score = 32.3 bits (70), Expect = 0.36
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +3

Query: 498 GHQLAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDESLTITLYNRNRS 653
           G     +  L  GL DS+    MG+TAE +  Q+ ++R+E     L ++ R+
Sbjct: 140 GDMTLIDTMLKDGLMDSFNNYHMGITAENVAKQWEVSREEQDNFALTSQQRT 191


>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 21/40 (52%), Positives = 27/40 (67%)
 Frame = +1

Query: 277 DGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQ 396
           D  Y  RH  +K+ +P   P L +NRLCGSGFQSI++ AQ
Sbjct: 762 DAAYVARHIGIKSKVPVTTPALTVNRLCGSGFQSIISGAQ 801



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 26/52 (50%), Positives = 34/52 (65%)
 Frame = +3

Query: 495 SGHQLAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDESLTITLYNRNR 650
           SG Q+  EDTLW GL+D   GLPMG+TAE L  ++ ITR+E     L ++ R
Sbjct: 798 SGAQM--EDTLWQGLTDMLPGLPMGITAENLAEKYNITREECDQFALLSQQR 847



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
 Frame = +2

Query: 116 AKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQ-SSLHHKLTESTR 292
           AKRT FG FGG  ++ +AT L   A+V A++   V PA VDS++ G      +      R
Sbjct: 709 AKRTAFGAFGGRLKDFTATVLGEHASVAAMESGKVDPATVDSVIFGNVLQCANDAAYVAR 768

Query: 293 HVTRRSKL 316
           H+  +SK+
Sbjct: 769 HIGIKSKV 776


>SB_41352| Best HMM Match : MIB_HERC2 (HMM E-Value=3.1)
          Length = 271

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +3

Query: 300 RGAQSWYSSREAGARHQQTMRLWFPIDREQRSGHFD-RRSQDLSSGGSREHVASALRGQK 476
           RGAQ+W S +E     ++     +  +   RSG+F+ R S D SSG  R H AS  R + 
Sbjct: 28  RGAQNWSSPQERSWTSEE-----YGGEESYRSGNFEARESSDASSGSKRRHRASPHRHKY 82

Query: 477 REVRH 491
            E RH
Sbjct: 83  HE-RH 86


>SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +1

Query: 418 KISVAGGVENMSQAPFAVRNVRFGTALGTNSPSKTPSGPDSRTPTA 555
           +I+    V     A FA ++++  TA+ T + SKT + P SRTPT+
Sbjct: 111 RITAKQNVPPSRSAQFAGQSIQI-TAIATKTKSKTTTTPTSRTPTS 155


>SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)
          Length = 415

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 319 IPQEKPVLGINRLCGSGFQSIVNSAQDILTGA 414
           +P   P   IN++C SG +SI+ +AQ ++ G+
Sbjct: 26  LPISTPCTTINKVCASGMKSIMAAAQSLMCGS 57


>SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)
          Length = 600

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = +3

Query: 306 AQSWYSSREAGARHQQTMRLWFPIDREQRSGHFDRRSQDLSSGGSREHVASALRGQKREV 485
           ++S Y S E  ++H   +R    +     S   DRR  D+  GG     +S +  ++ +V
Sbjct: 401 SESVYESIEDNSQHNNRLRSVPRLGNTFESARRDRR--DVGEGGCHIAESSTMHAEESDV 458

Query: 486 RHGSGHQL 509
           + G G++L
Sbjct: 459 KVGQGNEL 466


>SB_55930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 643

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 24/87 (27%), Positives = 38/87 (43%)
 Frame = +2

Query: 236 DSMVVGQSSLHHKLTESTRHVTRRSKLVFLKRSRCSASTDYAALVSNRS*TALRTF*PAQ 415
           D+    Q S+ HK     R  T  S  +   +++   S  +     NRS T+       Q
Sbjct: 277 DAQAQAQESVKHKRKRKNRSNTSASARIGQTQAQAQESVKHKRKRKNRSNTSASAR-IGQ 335

Query: 416 PRSQ*RGE*RTCRKRPSRSET*GSARL 496
            ++Q +   +  RKR +RS T  SAR+
Sbjct: 336 TQAQAQESVKHKRKRKNRSNTSASARI 362


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = +3

Query: 381  REQRSGHFDRRSQDLSSGGSREHVASALR-----GQKREVRHGSGHQL 509
            R++ + H +  S+D  + GSR+H+    R     G + ++ HGS  QL
Sbjct: 4515 RDRLNQHSNHGSRDRINRGSRDHINHGSRDHINHGSRDQINHGSSEQL 4562


>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -1

Query: 192 VAIVCSSVADVLRKTPPKVPNGVLLAPTMKIPLTEADMIQNYT 64
           VA+  S+V+ V + TPPK+P   L   T+  PL  A +++ +T
Sbjct: 66  VALKESNVSPVPKTTPPKIPEEDLRPVTLTSPL--AKVMEGFT 106


>SB_19840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +1

Query: 169 DRTADDSHCRCAEGGRSVPGSGRQHGRGPVISSSQTDGIYTPRHAALKAGIPQE 330
           D  + DSH    +G  S P + R  G      +++ DG+ +  HA    G+P +
Sbjct: 23  DGMSSDSHATRGDGMSSDPHATRDDGMPSDPHATRDDGMSSDPHATRDDGMPSD 76



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +1

Query: 169 DRTADDSHCRCAEGGRSVPGSGRQHGRGPVISSSQTDGIYTPRHAALKAGIPQE 330
           D    D H    +G  S P + R  G      +++ DG+ +  HA    G+P E
Sbjct: 83  DGMPSDPHATRDDGMPSDPHATRDDGMSSDSHATRGDGVSSDSHATRGDGVPSE 136


>SB_57607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/82 (23%), Positives = 34/82 (41%)
 Frame = +1

Query: 262 SSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGV 441
           +++  D     R AA ++  P E+ V+  +    S    I+NS ++       + V   V
Sbjct: 186 NNNNNDAEEVDREAATRSPSPNEQQVIQEDNKRQSRLAWIINSGKNTTNTLLPLQVVSDV 245

Query: 442 ENMSQAPFAVRNVRFGTALGTN 507
           +N  Q  + +R  R      TN
Sbjct: 246 QNSEQVVYNLRRGRTIRPFPTN 267


>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1495

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 6    QTVRSSAIIKYISVLR*LDRYNFESCLLQLKGFSSWALKGR 128
            +T+ SSA   + SVL+      F   L+ + GF  W L  R
Sbjct: 994  ETIESSAKSMFFSVLKCFPMIGFSLMLVYIAGFIIWLLDSR 1034


>SB_52818| Best HMM Match : CUB (HMM E-Value=1.6e-23)
          Length = 898

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +1

Query: 217 SVPGSGRQHGRGPVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLC 360
           SVP +G+ H   P  + +        + A ++ G P   P++ I  +C
Sbjct: 355 SVPYTGKSHALTPTPTENSNSSHDKFKRACIQGGAPDNTPLIAIPLVC 402


>SB_19802| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1075

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/70 (28%), Positives = 38/70 (54%)
 Frame = -1

Query: 240 LST*AGDTPASFSAPTVAIVCSSVADVLRKTPPKVPNGVLLAPTMKIPLTEADMIQNYTY 61
           +S+     P + S+ ++ +  S+VA  L+  PP +PNGVLL  T+   +  +  + N + 
Sbjct: 578 ISSTVPSAPQNLSSHSLDV--STVA--LQWNPPLMPNGVLLRYTVSYSVQGSSNVMNVS- 632

Query: 60  PVNVELKYIL 31
            + ++  YIL
Sbjct: 633 -IGLDTHYIL 641


>SB_17683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 907

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 220 VPGSGRQHGRGPVISSSQTDGIYTP 294
           +PG+    G  PV+S  QT+G Y P
Sbjct: 396 LPGNYLPSGENPVVSRVQTEGAYIP 420


>SB_38719| Best HMM Match : TSC22 (HMM E-Value=1.1)
          Length = 344

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 220 VPGSGRQHGRGPVISSSQTDGIYTP 294
           +PG+    G  PV+S  QT+G Y P
Sbjct: 135 LPGNYLPSGENPVVSRVQTEGAYIP 159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,069,543
Number of Sequences: 59808
Number of extensions: 426974
Number of successful extensions: 1162
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)