Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060393.seq
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.84 
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    24   1.5  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    22   5.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 189  AIVCSSVADVLRKTPPKVPNGVLLAPTMKIPLTEADMIQNYTYPVN 52
            A+V SS + ++   PP  PNGV+   T+      A+   +   P N
Sbjct: 1188 ALVMSSESILVSWRPPSQPNGVITQYTVYTKADNAEEPTSQKVPPN 1233


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 394 ERCSRSIGNQSRIVC*CRAPASLEEYQL*APRDVA 290
           E+  R +  ++ + C CR   S+EEY +  P+++A
Sbjct: 99  EKKFRKVITKAPLECMCRPCTSVEEYAI-IPQEIA 132


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 282 NLHATSRGAQSWYSSREAGARHQQ 353
           +LH T    + W+ +R A A+  Q
Sbjct: 45  SLHLTETQVKIWFQNRRAKAKRLQ 68


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 211 GRSVPGSGRQH 243
           G S PG+GR+H
Sbjct: 392 GSSTPGTGREH 402


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,715
Number of Sequences: 438
Number of extensions: 3506
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)