Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060392.seq
(560 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 62 5e-11
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 50 2e-07
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 46 3e-06
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 41 1e-04
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 38 0.001
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 38 0.001
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 37 0.002
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 29 0.47
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 28 1.1
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 27 1.4
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 26 4.4
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 25 7.6
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 25 7.6
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 62.1 bits (144), Expect = 5e-11
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +3
Query: 261 EESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPI-DYSGGRQADDIISWLKKKTG 437
E+ I L +VD T+E DL Y +RGYPTL F+NG I YSG R+ D ++ +++K+
Sbjct: 69 EKDGISLVEVDCTEEGDLCSEYSIRGYPTLNVFKNGKQISQYSGPRKHDALVKYMRKQLL 128
Query: 438 PPAVEVTSG*TG*RTYRCQYCYCIGFFSDQ 527
P ++ + + FF DQ
Sbjct: 129 PTVKPISKDTLENFVEKADDLAVVAFFKDQ 158
Score = 58.0 bits (134), Expect = 9e-10
Identities = 23/43 (53%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Frame = +1
Query: 109 TEENVLVLSKANFETVI-STTEYILVEFYAPWCGHCKSLAPEY 234
++E+++VL NF+ ++ T+ +LVEFYAPWCGHCK+LAP Y
Sbjct: 353 SQEDLVVLVADNFDDIVMDETKDVLVEFYAPWCGHCKNLAPTY 395
Score = 52.0 bits (119), Expect = 6e-08
Identities = 18/35 (51%), Positives = 27/35 (77%)
Frame = +1
Query: 130 LSKANFETVISTTEYILVEFYAPWCGHCKSLAPEY 234
++K +I+ + ++V+FYAPWCGHCK+LAPEY
Sbjct: 27 VNKEGLNELITADKVLMVKFYAPWCGHCKALAPEY 61
Score = 39.9 bits (89), Expect = 3e-04
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 6/66 (9%)
Frame = +3
Query: 249 KAAEE---ESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNG---SPIDYSGGRQADDI 410
K AEE +S + +AK+DAT E D++ S + G+PT+ FF+ +P+ Y G R +D+
Sbjct: 397 KLAEEYSDDSNVVVAKIDAT-ENDISVS--ISGFPTIMFFKANDKVNPVRYEGDRTLEDL 453
Query: 411 ISWLKK 428
+++ K
Sbjct: 454 SAFIDK 459
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 50.0 bits (114), Expect = 2e-07
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Frame = +3
Query: 258 EEESPIKLAKVDATQEQDLAESYGVRGYPTLKFF-RNGS-PIDYSGGRQADDIISWLKKK 431
E+ + + + K+DA D+A+ Y + G+PTL +F +GS P+ YS R D + ++ +K
Sbjct: 69 EDHNDVLIGKIDADTHSDVADKYHITGFPTLIWFPPDGSEPVQYSNARDVDSLTQFVSEK 128
Query: 432 TG 437
TG
Sbjct: 129 TG 130
Score = 48.8 bits (111), Expect = 5e-07
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +1
Query: 118 NVLVLSKANFETVISTTEY-ILVEFYAPWCGHCKSLAPEY 234
NV+ L NF+ V+ + +LVEFYA WCG+CK LAP Y
Sbjct: 141 NVVELDSLNFDKVVMDDKKDVLVEFYADWCGYCKRLAPTY 180
Score = 46.4 bits (105), Expect = 3e-06
Identities = 24/61 (39%), Positives = 33/61 (54%)
Frame = +1
Query: 52 VLIFTAIALLGLALGDEVPTEENVLVLSKANFETVISTTEYILVEFYAPWCGHCKSLAPE 231
+L F AL L V +++ L T+ ++ + L+EFYA WCGHCKSLAP
Sbjct: 5 LLSFVIFALFALVFASGVVELQSLNELEN----TIRASKKGALIEFYATWCGHCKSLAPV 60
Query: 232 Y 234
Y
Sbjct: 61 Y 61
Score = 39.5 bits (88), Expect = 3e-04
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +3
Query: 249 KAAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFF---RNGSPIDYSGGRQADDIISW 419
K + E +++ K++A D+ + V +PT+KFF P Y G R + +I +
Sbjct: 185 KVFKNEPNVEIVKINADVFADIGRLHEVASFPTIKFFPKDDKDKPELYEGDRSLESLIEY 244
Query: 420 LKKKTG 437
+ KK+G
Sbjct: 245 INKKSG 250
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 46.4 bits (105), Expect = 3e-06
Identities = 21/60 (35%), Positives = 27/60 (45%)
Frame = +1
Query: 55 LIFTAIALLGLALGDEVPTEENVLVLSKANFETVISTTEYILVEFYAPWCGHCKSLAPEY 234
L +L+ G N + L+ NF + LV FYAPWCG+CK L P Y
Sbjct: 11 LFLACFSLVSGVFGYSPMFGSNTIELNSKNFRKFVKAKGPSLVVFYAPWCGYCKKLVPTY 70
Score = 28.7 bits (61), Expect = 0.62
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Frame = +3
Query: 270 PIKLAKVDATQEQDLAESYGVRGYPTLKFF---RNGSPI---DYSGGR 395
P+ DA Q + + Y V+G+PT+K GS + DY+G R
Sbjct: 82 PVTAVDCDADQNRAVCSQYQVQGFPTIKLVYPSSKGSSLSSTDYNGDR 129
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 41.1 bits (92), Expect = 1e-04
Identities = 12/36 (33%), Positives = 26/36 (72%)
Frame = +1
Query: 127 VLSKANFETVISTTEYILVEFYAPWCGHCKSLAPEY 234
V + F++++ + ++V+F+A WCG CK++AP++
Sbjct: 5 VSDSSEFKSIVCQDKLVVVDFFATWCGPCKAIAPKF 40
Score = 27.1 bits (57), Expect = 1.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 285 KVDATQEQDLAESYGVRGYPTLKFFRNGSPID 380
KVD Q ++A GV P+ ++NG I+
Sbjct: 54 KVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIE 85
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 37.9 bits (84), Expect = 0.001
Identities = 13/64 (20%), Positives = 36/64 (56%)
Frame = +3
Query: 273 IKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKKKTGPPAVE 452
+K+A+V+ +E+++ + ++ +PT + F+ I Y+G + ++S+ + A++
Sbjct: 230 LKMAQVNCDEEKEMCNHFHIKKFPTFRVFQGFDSIQYNGPLKYQQLLSYSNQVASYQAIK 289
Query: 453 VTSG 464
+ G
Sbjct: 290 IEEG 293
Score = 28.3 bits (60), Expect = 0.82
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = +3
Query: 312 LAESYGVRGYPTLKFFRNGSPIDYSG--GRQADD---IISWLKKKTGPPAVEVT 458
LA YG + P++ RNG PI Y R+ D I W+ + P E+T
Sbjct: 343 LANKYGAQSQPSIIAVRNGMPIVYQAITPREFRDYKRITEWINIVSSPFITELT 396
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 37.5 bits (83), Expect = 0.001
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 127 VLSKANFETVISTTEYILVEFYAPWCGHCKSLAP 228
V S ++ T IS + +V+FYA WCG CK L P
Sbjct: 22 VESFGDYNTRISADKVTVVDFYADWCGPCKYLKP 55
Score = 34.3 bits (75), Expect = 0.012
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +3
Query: 249 KAAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKK 428
K +E+ V+A + D+A+ GV PT+ FR G +D G + S L K
Sbjct: 59 KLSEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADVKTLSSLLAK 118
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 36.7 bits (81), Expect = 0.002
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 243 SHKAAEEESP-IKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGG 392
S A++ SP AKV+ +++ +A GV+ PT FF NG ID G
Sbjct: 42 SQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTG 92
Score = 33.9 bits (74), Expect = 0.016
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 127 VLSKANFETVISTTEYILVEFYAPWCGHCKSLAP 228
+ S ++ + I + Y+ V+ YA WCG CK+++P
Sbjct: 6 IRSYQHWISTIPKSGYLAVDCYADWCGPCKAISP 39
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 29.1 bits (62), Expect = 0.47
Identities = 10/52 (19%), Positives = 28/52 (53%)
Frame = +3
Query: 273 IKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKK 428
+ +A ++ + + Y ++ +PT FF+ + ++Y G D++S+ ++
Sbjct: 331 LNVAHINCAVSKRACKQYSIQYFPTFLFFKEEAFVEYVGLPNEGDLVSFAEE 382
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 130 LSKANFETVISTTEYILVEFYAPWCGHCKSLAP 228
L+ + E+ +S + +++Y P CG CK L P
Sbjct: 31 LTDNDLESEVSKGTWF-IKYYLPSCGACKRLGP 62
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 1.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 169 EYILVEFYAPWCGHCKSL 222
+ IL+ FYAPW CK +
Sbjct: 21 QIILLNFYAPWAAPCKQM 38
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = -1
Query: 515 ETNTITVLASISSLACSARGNLNSRGASLLLQPTDDVISLTTT*IVNRT 369
+ + +T+ S+ ++GNL+ SLL +D+V +TTT +V+ T
Sbjct: 291 DIDQLTICPSLQGFEFDSKGNLD---VSLLKSLSDEVNMITTTSLVDNT 336
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 25.8 bits (54), Expect = 4.4
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -3
Query: 54 NTHCDIIGTFLL 19
NTHCDI+ +FLL
Sbjct: 275 NTHCDIVTSFLL 286
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 25.0 bits (52), Expect = 7.6
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +3
Query: 240 GSHKAAEEESPIKLAKVDATQEQDLAESYGVRGY 341
GS AE+E PI + + D A S G GY
Sbjct: 585 GSKDNAEDEEPISIYYEGYEESMDEASSTGDEGY 618
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 25.0 bits (52), Expect = 7.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 452 LNSRGASLLLQPTDDVISLTTT*IVNRTAIPEELESRVS 336
L+ RG + QPTDD L T+ ++ R + LE +V+
Sbjct: 127 LSKRGGPSMFQPTDDCAYLGTSYVLIRL---QSLEGKVA 162
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,161,740
Number of Sequences: 5004
Number of extensions: 39558
Number of successful extensions: 122
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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