Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060392.seq
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    25   0.52 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    25   0.52 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.1  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   2.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   6.4  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 548 VFGSG*ALVRKETNTITVLASISSLACSARGNLNSRGASLLL 423
           VFGS   + +  TN         +++C   G LNS+ A++++
Sbjct: 134 VFGSISGMGQAMTNAAIAFDRYRTISCPIDGRLNSKQAAVII 175


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 548 VFGSG*ALVRKETNTITVLASISSLACSARGNLNSRGASLLL 423
           VFGS   + +  TN         +++C   G LNS+ A++++
Sbjct: 134 VFGSISGMGQAMTNAAIAFDRYRTISCPIDGRLNSKQAAVII 175


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -1

Query: 446 SRGASLLLQPTDDVISLTTT*IVNRTAIPEELESRVSSHTVALGEILFLSC 294
           ++G  L   P   +  LTT  ++ +  IP+E     S +T  + +I    C
Sbjct: 270 AKGGKLACPPAIFIFDLTTDTLIRKYIIPKEQVKEDSLYTNIVVDIRNEDC 320


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 205 RTMEHRIQLKCTPWLKLQFQS*LYS--KRAHFLQWALHLR 92
           RT E R+Q +   WL  Q +   Y   KR   L++ L+++
Sbjct: 30  RTKEERLQYRREAWLVQQEREQEYEKLKRKMILEYELYIK 69


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 468 TG*RTYRCQYC 500
           TG + Y+C+YC
Sbjct: 115 TGEKPYQCEYC 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,755
Number of Sequences: 438
Number of extensions: 2587
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)