Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060391.seq
(573 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 183 2e-45
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 107 2e-22
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 90 3e-17
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 83 3e-15
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 81 1e-14
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 79 6e-14
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 78 1e-13
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 77 2e-13
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 75 9e-13
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 72 1e-11
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 72 1e-11
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 70 4e-11
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 69 8e-11
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 69 1e-10
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 68 1e-10
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 67 3e-10
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 64 3e-09
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 63 4e-09
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 60 5e-08
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 59 8e-08
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 55 1e-06
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 51 2e-05
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 46 8e-04
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 42 0.008
UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1; Encephal... 40 0.031
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 40 0.041
UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5; Archae... 40 0.041
UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8; Euryar... 40 0.055
UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole ge... 39 0.072
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 38 0.22
UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14; Archa... 36 0.89
UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 34 2.7
UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1; ... 34 2.7
UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:... 33 3.6
UniRef50_A1CF41 Cluster: Translation factor pelota, putative; n=... 33 4.8
UniRef50_A4JQI5 Cluster: Major facilitator superfamily MFS_1; n=... 33 6.3
UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2; Lactoc... 33 6.3
UniRef50_Q4PB57 Cluster: Putative uncharacterized protein; n=1; ... 33 6.3
UniRef50_UPI000023DB34 Cluster: hypothetical protein FG02414.1; ... 32 8.3
UniRef50_Q483P8 Cluster: Putative membrane protein; n=1; Colwell... 32 8.3
UniRef50_Q0D9G3 Cluster: Os06g0717700 protein; n=1; Oryza sativa... 32 8.3
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 183 bits (446), Expect = 2e-45
Identities = 85/89 (95%), Positives = 87/89 (97%)
Frame = +2
Query: 242 GNQNIPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 421
G + +PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL
Sbjct: 83 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 142
Query: 422 VGILPSGLLLVTGPFAFNSCPLRRIPQRY 508
VGILPSGLLLVTGPFAFNSCPLRRIPQRY
Sbjct: 143 VGILPSGLLLVTGPFAFNSCPLRRIPQRY 171
Score = 101 bits (242), Expect = 1e-20
Identities = 48/60 (80%), Positives = 48/60 (80%)
Frame = +3
Query: 81 PRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTYP 260
PRNYDLGNGVMRFSKSKMFHKKAKYKFIG LTVVVKQIGGEKNGGTRT P
Sbjct: 29 PRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKNGGTRTVP 88
Score = 52.8 bits (121), Expect = 6e-06
Identities = 24/37 (64%), Positives = 26/37 (70%)
Frame = +1
Query: 463 FCFQFVPVTPHSSALLIGTSTRISLGNFKLPKHFNDD 573
F F P+ +IGTSTRISLGNFKLPKHFNDD
Sbjct: 157 FAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDD 193
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 107 bits (257), Expect = 2e-22
Identities = 52/89 (58%), Positives = 63/89 (70%)
Frame = +2
Query: 242 GNQNIPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 421
G + + LK+ K+ YPT+ ++ FS+H R R NL GTV ILLAGRH GKRVVL
Sbjct: 75 GERTVFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVL 134
Query: 422 VGILPSGLLLVTGPFAFNSCPLRRIPQRY 508
+ +L SGLLLVTGPFA NSCPLRR+ QRY
Sbjct: 135 LKVLASGLLLVTGPFALNSCPLRRVSQRY 163
Score = 41.5 bits (93), Expect = 0.014
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +3
Query: 81 PRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRT 254
P N L G++R+SK++M+ ++A Y+ VK+IGG KNGG RT
Sbjct: 21 PVNSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERT 78
Score = 36.7 bits (81), Expect = 0.39
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 463 FCFQFVPVTPHSSALLIGTSTRISLGNFKLPKHFND 570
F P+ S +IGTS+++ LG FK+P+H ND
Sbjct: 149 FALNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLND 184
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 90.2 bits (214), Expect = 3e-17
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
Frame = +2
Query: 242 GNQNIPLKRRKSFYPTQEKIRA--SSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRV 415
G + + L++ +YPT++ R S G +PFS+HVR++R ++ GT+ I+L GRH GKRV
Sbjct: 103 GTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRV 162
Query: 416 VLVGILPSGLLLVTGPFAFNSCPLRRIPQRY 508
V + L SGLLLVTGP N PLRR Q++
Sbjct: 163 VFLKQLASGLLLVTGPLVLNRVPLRRTHQKF 193
Score = 39.5 bits (88), Expect = 0.055
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +3
Query: 84 RNYDLGNGVMRFSKSKMFHKKA----KYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTR 251
RN L G+ R+S+S M+ +KA KY L V K +GG+KNGGTR
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Score = 32.3 bits (70), Expect = 8.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 478 VPVTPHSSALLIGTSTRISLGNFKLPKHFND 570
VP+ +I TST+I + N K+PKH D
Sbjct: 184 VPLRRTHQKFVIATSTKIDISNVKIPKHLTD 214
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 83.4 bits (197), Expect = 3e-15
Identities = 43/89 (48%), Positives = 57/89 (64%)
Frame = +2
Query: 242 GNQNIPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 421
G + +P++R +YPT++ +R R + ++R ++ GTV ILLAG H GKRVV
Sbjct: 63 GKRVVPVQRESRYYPTED-VRRRLANRK-KPGMAKLRSSITPGTVLILLAGAHRGKRVVF 120
Query: 422 VGILPSGLLLVTGPFAFNSCPLRRIPQRY 508
+ L SGLLLVTGPF N PLRRIPQ Y
Sbjct: 121 LKQLNSGLLLVTGPFKINGVPLRRIPQSY 149
Score = 39.9 bits (89), Expect = 0.041
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = +3
Query: 84 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTYPS 263
RN +L G+ R+S+S ++ K+A YK T K IGG+KNGG R P
Sbjct: 11 RNPELAPGISRYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNGGKRVVPV 69
Query: 264 NVGS---PSTPLRRK 299
S P+ +RR+
Sbjct: 70 QRESRYYPTEDVRRR 84
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 81.4 bits (192), Expect = 1e-14
Identities = 45/87 (51%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Frame = +2
Query: 257 PLKRRKSFYPTQE---KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 427
P R Y TQ+ K+R + FS HVR+IR +++ GTV ILLAG H GKRV+ +
Sbjct: 55 PKTRFPRSYVTQQGKRKLRLRRA-KCFSNHVRKIRSSIQPGTVLILLAGPHKGKRVIFLK 113
Query: 428 ILPSGLLLVTGPFAFNSCPLRRIPQRY 508
L SGLLLVTGPF +N PLRR+ Q Y
Sbjct: 114 ALKSGLLLVTGPFKYNGVPLRRVNQCY 140
Score = 33.9 bits (74), Expect = 2.7
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 463 FCFQFVPVTPHSSALLIGTSTRISLGNFKLPKHFNDD 573
F + VP+ + +I TSTRI + F +PKH +D+
Sbjct: 126 FKYNGVPLRRVNQCYVIATSTRIDISKFDVPKHIDDE 162
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 79.4 bits (187), Expect = 6e-14
Identities = 42/91 (46%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Frame = +2
Query: 242 GNQNIPLKRRKSFYPTQE--KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRV 415
G + +PLK+ + YPT++ + + +S +P S+ +R + GTV ILLAG H GKRV
Sbjct: 79 GKRVLPLKKERRSYPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAGPHRGKRV 138
Query: 416 VLVGILPSGLLLVTGPFAFNSCPLRRIPQRY 508
V + L +GLL VTGP+ N CPLRRI Q Y
Sbjct: 139 VFLKQLKTGLLPVTGPYGVNGCPLRRINQIY 169
Score = 51.2 bits (117), Expect = 2e-05
Identities = 25/60 (41%), Positives = 32/60 (53%)
Frame = +3
Query: 81 PRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTYP 260
P+N+ L GV FS+SKMFHK+ +K V VK++ GEKNGG R P
Sbjct: 25 PKNHKLPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLP 84
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 78.2 bits (184), Expect = 1e-13
Identities = 38/61 (62%), Positives = 44/61 (72%)
Frame = +2
Query: 326 FSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR 505
F+ H RRIR ++ G V ILLAGRH KRVV + L SGLLLVTGPF +N PLRR+ QR
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFLKSLASGLLLVTGPFKYNGVPLRRVNQR 145
Query: 506 Y 508
Y
Sbjct: 146 Y 146
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 77.4 bits (182), Expect = 2e-13
Identities = 42/85 (49%), Positives = 55/85 (64%)
Frame = +2
Query: 254 IPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 433
+ L RRK+ K + GR ++ V ++R +LK G V ILL G + GKRVVL+ +L
Sbjct: 12 VKLNRRKTVVTRLGKTKVV--GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKVL 68
Query: 434 PSGLLLVTGPFAFNSCPLRRIPQRY 508
SGLLLVTGPF+FN PLRR+ RY
Sbjct: 69 KSGLLLVTGPFSFNGVPLRRVNSRY 93
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 75.4 bits (177), Expect = 9e-13
Identities = 36/84 (42%), Positives = 54/84 (64%)
Frame = +2
Query: 257 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 436
P ++ + +YP ++ + + + H ++RP+L+ GT+ ILLAGR GKRV+L+ L
Sbjct: 26 PSQKAQKWYPADDEPQPKKARK--TAHPTKLRPSLQPGTILILLAGRFRGKRVILLKHLG 83
Query: 437 SGLLLVTGPFAFNSCPLRRIPQRY 508
G+LLVTGPF N PLRR+ RY
Sbjct: 84 QGVLLVTGPFKLNGVPLRRVNARY 107
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 71.7 bits (168), Expect = 1e-11
Identities = 38/89 (42%), Positives = 53/89 (59%)
Frame = +2
Query: 242 GNQNIPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 421
G + +P K+ +YP +K + K + +RP++K GT+ ILLAG G RVV+
Sbjct: 34 GYRLVPEKKGPKWYPADDKKTPVPSRKNVHKPTK-LRPSIKSGTIVILLAGVFRGSRVVV 92
Query: 422 VGILPSGLLLVTGPFAFNSCPLRRIPQRY 508
+ L SG LLVTGP+A N PL R+ QRY
Sbjct: 93 LKQLDSGQLLVTGPYAVNRIPLTRVDQRY 121
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 71.7 bits (168), Expect = 1e-11
Identities = 38/84 (45%), Positives = 53/84 (63%)
Frame = +2
Query: 257 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 436
P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L
Sbjct: 57 PVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLA 114
Query: 437 SGLLLVTGPFAFNSCPLRRIPQRY 508
SGLLLVTGPF N PLRR+ Q Y
Sbjct: 115 SGLLLVTGPFKINGVPLRRVNQAY 138
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 69.7 bits (163), Expect = 4e-11
Identities = 34/69 (49%), Positives = 46/69 (66%)
Frame = +2
Query: 302 RASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSC 481
R S R S ++R +L+ G VCILLAG + GKRVV++ LPSGL++VTGP+A N
Sbjct: 20 RKYSSRRKASVVAPKLRSSLQPGVVCILLAGPYKGKRVVMLKALPSGLVVVTGPYALNGV 79
Query: 482 PLRRIPQRY 508
P+RR+ Y
Sbjct: 80 PVRRVNPAY 88
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 68.9 bits (161), Expect = 8e-11
Identities = 39/78 (50%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Frame = +2
Query: 278 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 454
FYP + K R S +P + ++R ++ GTV ILLAGR GKRVV + L SGLLLV
Sbjct: 53 FYPADDVKPRQPSTRKP---NPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLV 109
Query: 455 TGPFAFNSCPLRRIPQRY 508
TGPF N P+RR+ Q Y
Sbjct: 110 TGPFKINGVPIRRVNQPY 127
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 68.5 bits (160), Expect = 1e-10
Identities = 33/54 (61%), Positives = 40/54 (74%)
Frame = +2
Query: 347 IRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRY 508
+R ++ GTV I+LAGR AGKRVV + L SGL+L+TGPF N PLRRI QRY
Sbjct: 87 LRKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQRY 140
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 68.1 bits (159), Expect = 1e-10
Identities = 36/88 (40%), Positives = 53/88 (60%)
Frame = +2
Query: 242 GNQNIPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 421
G + + ++ FYP + + +K+ +IR +L+ GT+ ILLAG + GKRVVL
Sbjct: 56 GTRLVSTRKPPQFYPINSRQKRFHRRLVNNKNPPKIRKSLQPGTILILLAGVNRGKRVVL 115
Query: 422 VGILPSGLLLVTGPFAFNSCPLRRIPQR 505
+ L SGLLLV+GP N PLRR+ Q+
Sbjct: 116 LKALKSGLLLVSGPLKVNRVPLRRVHQK 143
Score = 35.1 bits (77), Expect = 1.2
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 478 VPVTPHSSALLIGTSTRISLGNFKLPKHFND 570
VP+ L+I TSTRI + N K+P+H ND
Sbjct: 135 VPLRRVHQKLVIATSTRIDISNVKVPEHIND 165
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 66.9 bits (156), Expect = 3e-10
Identities = 36/65 (55%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Frame = +2
Query: 320 RPFSKHVRRIRPNLKI--GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRR 493
RP K +R P + GTV ILLAGR GKRVVL+ L G+LLVTGPF N PLRR
Sbjct: 24 RPVRKTIRPWSPRSTLVPGTVLILLAGRFRGKRVVLLKALDQGVLLVTGPFKINGVPLRR 83
Query: 494 IPQRY 508
+ RY
Sbjct: 84 VNARY 88
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 63.7 bits (148), Expect = 3e-09
Identities = 25/56 (44%), Positives = 39/56 (69%)
Frame = +2
Query: 341 RRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRY 508
R++R ++++G V I+L G+H GKR ++ +L SGLL V GP+ N PL+R+ RY
Sbjct: 68 RKMRSSIQVGKVAIILTGKHMGKRCIIAKVLKSGLLAVVGPYEVNGVPLKRVDPRY 123
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 63.3 bits (147), Expect = 4e-09
Identities = 34/55 (61%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Frame = +2
Query: 347 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRY 508
+R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI Q +
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAF 121
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 59.7 bits (138), Expect = 5e-08
Identities = 33/82 (40%), Positives = 50/82 (60%)
Frame = +2
Query: 263 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 442
++ +YP+++ + A R ++ +++R +L GTV ILLAGR GKRVV + L
Sbjct: 4 QKAPKWYPSED-VAALKKTRKAARP-QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDN 61
Query: 443 LLLVTGPFAFNSCPLRRIPQRY 508
LL++GPF N PLRR+ RY
Sbjct: 62 TLLISGPFKVNGVPLRRVNARY 83
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 58.8 bits (136), Expect = 8e-08
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 8/95 (8%)
Frame = +2
Query: 248 QNIPLKRRK----SFYPTQEK----IRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHA 403
Q++P K+R ++Y + ++ +R RP + +R+I P G V ILL+GR
Sbjct: 19 QSMPAKKRSVRIGNWYKSDDEKVHFVRKRKAPRPAT--LRKIVP----GQVLILLSGRFQ 72
Query: 404 GKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRY 508
GKRVV + L SGLLLVTGPF N PL+R+ Y
Sbjct: 73 GKRVVFLKQLKSGLLLVTGPFKINGVPLKRVNSAY 107
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 55.2 bits (127), Expect = 1e-06
Identities = 28/44 (63%), Positives = 31/44 (70%)
Frame = +2
Query: 371 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQ 502
TV I+L GRH GKRVV + L SGLLLVTGP A N PL R+ Q
Sbjct: 13 TVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLCRMHQ 56
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 51.2 bits (117), Expect = 2e-05
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = +2
Query: 347 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRY 508
+R + G + I+LAGR G+R V++ LP +G L+V+GP +N P+RRI RY
Sbjct: 29 LRKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRY 83
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 45.6 bits (103), Expect = 8e-04
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +2
Query: 350 RPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRY 508
RP+LK+GTV I++ G H GKR V+V +G++ + GP P+ I Q Y
Sbjct: 53 RPSLKVGTVVIVVGGEHQGKRAVVVADQGAGIVKIAGPVV----PVNEISQDY 101
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 42.3 bits (95), Expect = 0.008
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +2
Query: 407 KRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRY 508
KRVV + L SGLLL+TG F N PLRR+ Q Y
Sbjct: 156 KRVVFLKQLSSGLLLITGSFKINGVPLRRVNQAY 189
>UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L6 -
Encephalitozoon cuniculi
Length = 155
Score = 40.3 bits (90), Expect = 0.031
Identities = 27/72 (37%), Positives = 38/72 (52%)
Frame = +2
Query: 293 EKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAF 472
EK +A + +P VRR +L G V ++L G A +RVV + L + L GP +
Sbjct: 10 EKYKARTARKP---RVRRT--DLVKGMVVVVLEGVFASRRVVYLKGLEDNIALCAGPKSI 64
Query: 473 NSCPLRRIPQRY 508
N PL RI +RY
Sbjct: 65 NGIPLFRIDERY 76
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 39.9 bits (89), Expect = 0.041
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +2
Query: 350 RPNLKIGTVCILLAGRHAGKRVVLVGILP 436
+P +K G VCI+L GRHAGK+ V+V LP
Sbjct: 3 QPIIKPGLVCIVLQGRHAGKKAVIVEALP 31
>UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5;
Archaea|Rep: 50S ribosomal protein L14e - Pyrococcus
furiosus
Length = 83
Score = 39.9 bits (89), Expect = 0.041
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +2
Query: 353 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 496
P + +G + +++AGR AG++VV+V I+ +LVTG N RR+
Sbjct: 2 PAIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRM 48
>UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8;
Euryarchaeota|Rep: 50S ribosomal protein L14e -
Methanococcus jannaschii
Length = 80
Score = 39.5 bits (88), Expect = 0.055
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 353 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 496
P +++G VCI AGR AGK V+V IL ++V G C ++ +
Sbjct: 2 PAIEVGRVCIKTAGREAGKVCVIVDILDKNFVIVDGLVKRRRCNIKHL 49
>UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_103, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 345
Score = 39.1 bits (87), Expect = 0.072
Identities = 26/69 (37%), Positives = 39/69 (56%)
Frame = +2
Query: 278 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 457
FYP + ++ + +K ++ +R ++ GTV I+LAGR VV + L SGLLL+T
Sbjct: 207 FYPADD-VKKPLINKHKAKPIK-LRASITPGTVLIILAGR-----VVFLKQLSSGLLLIT 259
Query: 458 GPFAFNSCP 484
G F N P
Sbjct: 260 GSFKINDVP 268
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 37.5 bits (83), Expect = 0.22
Identities = 24/61 (39%), Positives = 33/61 (54%)
Frame = +2
Query: 323 PFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQ 502
P KH + + N TV I++ G+H +RVV + L G LL+TGP A N L R Q
Sbjct: 123 PAFKHEKAVC-NSTPETVLIIITGQH--RRVVFLKQLSRGFLLITGPLALNLVLLYRTHQ 179
Query: 503 R 505
+
Sbjct: 180 K 180
>UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14;
Archaea|Rep: 50S ribosomal protein L14e - Pyrobaculum
aerophilum
Length = 103
Score = 35.5 bits (78), Expect = 0.89
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 359 LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 496
+ IG V + + GR AG++ V+V I+ +++TGP RR+
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRV 50
>UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
Sensor protein - Pseudomonas syringae pv. syringae
(strain B728a)
Length = 676
Score = 33.9 bits (74), Expect = 2.7
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +2
Query: 317 GRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFN 475
GR ++ R++RP LK+ + + G +A V G L +G+ L+T PFAF+
Sbjct: 617 GRQLAEIARQLRPELKV----LFITG-YAEHAAVRGGFLDTGMQLITKPFAFD 664
>UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 752
Score = 33.9 bits (74), Expect = 2.7
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +2
Query: 245 NQNIPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLK 364
N+ LK SF P + + ASS GRP K +R+R LK
Sbjct: 132 NREEELKAMVSFMPHRPAVDASSSGRPMKKDSKRMRNGLK 171
>UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:
VpsB, putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 686
Score = 33.5 bits (73), Expect = 3.6
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -1
Query: 432 RIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARI 298
R+P+ L A L A R Q P ++ +++ T + NG PP+ AR+
Sbjct: 397 RVPSPNKLRLAILYALRYQKSPSAQIPQVVSTLISNGVPPERARL 441
>UniRef50_A1CF41 Cluster: Translation factor pelota, putative; n=7;
Pezizomycotina|Rep: Translation factor pelota, putative
- Aspergillus clavatus
Length = 410
Score = 33.1 bits (72), Expect = 4.8
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 243 GTRTYPSNVGSPSTPLRRKSVPHLVAVHSASMYAGS 350
G + Y +V S +TP ++ +P LV VHSAS Y S
Sbjct: 237 GFQKYIQSVASTTTPALKRLLPSLVVVHSASGYLHS 272
>UniRef50_A4JQI5 Cluster: Major facilitator superfamily MFS_1; n=6;
Burkholderia|Rep: Major facilitator superfamily MFS_1 -
Burkholderia vietnamiensis (strain G4 / LMG 22486)
(Burkholderiacepacia (strain R1808))
Length = 476
Score = 32.7 bits (71), Expect = 6.3
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +3
Query: 414 LYLLEFCPAVCF*LL-DLLLSIRARYAAFLSAIDRH 518
L+L+E PA+ L+ L+LS R AA+LSA DRH
Sbjct: 218 LFLIEGLPAIALGLIAPLMLSDRPEQAAWLSAADRH 253
>UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2;
Lactococcus lactis subsp. cremoris|Rep:
Cation-transporting ATPase - Lactococcus lactis subsp.
cremoris (strain MG1363)
Length = 841
Score = 32.7 bits (71), Expect = 6.3
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +2
Query: 410 RVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR 505
+++++GI+P +L++ F F+S L IPQR
Sbjct: 215 KIIVIGIIPISILVLLNQFVFSSLDLSVIPQR 246
>UniRef50_Q4PB57 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 1427
Score = 32.7 bits (71), Expect = 6.3
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 204 TVVVKQIGGEKNGGTRTYPSNVGSPSTPLRRKSVPHLVAVHSASMYAGS 350
T++ K I NG T PS + STP R S P++ S +AGS
Sbjct: 988 TLLQKSISNNSNGSTSVLPS-IAEASTPTRAGSRPYIARGPSRRRHAGS 1035
>UniRef50_UPI000023DB34 Cluster: hypothetical protein FG02414.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG02414.1 - Gibberella zeae PH-1
Length = 607
Score = 32.3 bits (70), Expect = 8.3
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +2
Query: 260 LKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCI--LLAGRHAGKRVVLVGIL 433
L+ R +F P+Q KI + F++HV R+R NL+I I L+A + GK V+ GIL
Sbjct: 431 LESRDAF-PSQIKIPCKAELASFTRHVERVRKNLEIRVTQIESLIAWLNEGK-VLFDGIL 488
>UniRef50_Q483P8 Cluster: Putative membrane protein; n=1; Colwellia
psychrerythraea 34H|Rep: Putative membrane protein -
Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 249
Score = 32.3 bits (70), Expect = 8.3
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -1
Query: 459 PVTKSRPLGRIPTSTTLLPA-CLP-ARRMQTVPIFRLGRILRTCLL 328
P TK G IP + T P+ C P A R+ V ++ +GRI CL+
Sbjct: 41 PTTKESLQGDIPVNVTSAPSGCSPQASRLNLVFLYHVGRIASYCLI 86
>UniRef50_Q0D9G3 Cluster: Os06g0717700 protein; n=1; Oryza sativa
(japonica cultivar-group)|Rep: Os06g0717700 protein -
Oryza sativa subsp. japonica (Rice)
Length = 115
Score = 32.3 bits (70), Expect = 8.3
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +1
Query: 280 LPHSGENPCLIWWPSIQQACTQDPTQPEDRNCLHSPRW*TCRQEGCTCWNSAQRSAFS 453
L H+G++PCLI PS+ T + Q + SP W +C + + ++Q S S
Sbjct: 50 LRHNGQDPCLINQPSMHG--TWNTCQQSGKLLTFSPVWKSCSSKRSQMFQNSQDSVIS 105
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 571,581,766
Number of Sequences: 1657284
Number of extensions: 11496867
Number of successful extensions: 30888
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 29801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30872
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39154548218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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