Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060391.seq
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    59   4e-10
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    31   0.12 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   2.6  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    26   4.5  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    26   4.5  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 59.3 bits (137), Expect = 4e-10
 Identities = 29/55 (52%), Positives = 38/55 (69%)
 Frame = +2

Query: 344 RIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRY 508
           ++R +L  GTVCILLAGR  GKRVV++  L    L+VTGP+  N  P+RR+  RY
Sbjct: 47  KLRASLAPGTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRY 100


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 426 PTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIFS 292
           P S+ + P  LP+RR +T  I  L  ++  CLL    P  +R FS
Sbjct: 21  PESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAFS 65


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 204 TVVVKQIGGEKNGGTRTYPSNVGSPSTPLRRKSVPHLVAVHSASMYAGS 350
           T  V + G      T TYPS+  S +T     S  H  + HS+S  + S
Sbjct: 593 TSTVSESGSSSASITSTYPSSTLSMTTSHLSSSSVHSSSAHSSSSRSSS 641


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = +3

Query: 255 YPSNVGSPST-----PLRRKSVPHLVAVHSASMY 341
           Y SNV SPS      P R  ++  L+ VHS  MY
Sbjct: 96  YVSNVPSPSDVFLRIPAREATLEELLQVHSQEMY 129


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 113 HHSVAQIIVPGFFRRFFLSXAHL 45
           H  VAQ IVPG F++     +HL
Sbjct: 466 HRVVAQTIVPGIFKQLENGSSHL 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,370
Number of Sequences: 5004
Number of extensions: 45199
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)