Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060391.seq
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    69   4e-12
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...    67   8e-12
02_02_0470 - 10700092-10700505                                         30   1.5  
10_08_0951 - 21769342-21769752                                         29   3.5  
06_01_0604 - 4358278-4358442,4358835-4358943,4359236-4359331,435...    28   6.1  
05_07_0258 - 28729620-28729782,28730193-28730339,28730808-287310...    27   8.0  
01_06_0579 + 30379243-30379617                                         27   8.0  

>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 38/78 (48%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
 Frame = +2

Query: 278 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 454
           FYP  + K RA S  +    +  ++R  +  GTV ILLAGR+ GKRVV +  L SGLLL+
Sbjct: 50  FYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLI 106

Query: 455 TGPFAFNSCPLRRIPQRY 508
           TGPF  N  P+RR+ Q Y
Sbjct: 107 TGPFKINGVPIRRVNQAY 124


>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score = 67.3 bits (157), Expect = 8e-12
 Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
 Frame = +2

Query: 284 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 457
           PT+ +  +SS    FS  + +  +R ++  GTV ILLAGR  GKRVV +  L SGLLLVT
Sbjct: 71  PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130

Query: 458 GPFAFNSCPLRRIPQRY 508
           GPF  N  P+RR+ Q Y
Sbjct: 131 GPFKINGVPIRRVNQPY 147


>02_02_0470 - 10700092-10700505
          Length = 137

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 359 LKIGTVCILLAGRHAGKRVVLVGILPSG 442
           LK G   ILL GR+AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRYAGRKAVIVRVFEEG 32


>10_08_0951 - 21769342-21769752
          Length = 136

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 359 LKIGTVCILLAGRHAGKRVVLVGILPSG 442
           LK G   ILL GR AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRFAGRKAVIVRVFEEG 32


>06_01_0604 -
           4358278-4358442,4358835-4358943,4359236-4359331,
           4359823-4359956,4360639-4360905,4361225-4361310,
           4361409-4361501,4361601-4361696,4361986-4362093,
           4362473-4362493,4363856-4364156
          Length = 491

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = +1

Query: 376 LHSPRW*TCRQEGCTCWNSAQRSAFSYWTFCFQF----VPVTPHSSALLIGTSTRISLGN 543
           ++  +W TC     T W   +RS    +    Q+       +  + A+L  TSTR S+  
Sbjct: 360 INKSKWETCSDVVNTNWKDCERSVLHIYHELIQYGLRIWVFSGDTDAVLPVTSTRYSINA 419

Query: 544 FKLP 555
            KLP
Sbjct: 420 LKLP 423


>05_07_0258 -
           28729620-28729782,28730193-28730339,28730808-28731032,
           28731148-28731178,28731424-28731940
          Length = 360

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = -3

Query: 424 NKYNPLACMSTSEENANSSYLQVGSDPAYMLAEWTATR*GTDFLLSGVEGLPTFEGYVLV 245
           N Y     + TS + A ++ L   +DP+    ++ +T  G   L +     P F GY   
Sbjct: 147 NSYYQKNPVQTSCDFAGTAIL-TSTDPSSSSCKYPSTSTGASVLNTSTPTNPAFGGYDNS 205

Query: 244 PPFF---SPPI 221
           PP F   SPP+
Sbjct: 206 PPGFGNNSPPL 216


>01_06_0579 + 30379243-30379617
          Length = 124

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 282 TPLRRKSVPHLVAVHSASMYAGSD 353
           +P+RR S PH +A  S+ ++ G D
Sbjct: 17  SPMRRSSSPHRLASSSSDLHGGDD 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,298,891
Number of Sequences: 37544
Number of extensions: 350320
Number of successful extensions: 857
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)