Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060391.seq
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24287| Best HMM Match : Homeobox (HMM E-Value=9e-28)                31   0.67 
SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               28   4.7  

>SB_24287| Best HMM Match : Homeobox (HMM E-Value=9e-28)
          Length = 561

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -3

Query: 274 LPTFEGYVLVPPFFSPP 224
           +PT +GY LVP FFSPP
Sbjct: 528 MPTAQGYGLVPNFFSPP 544


>SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 352 TQPEDRNCLHSPRW*TCRQEGCTCWN-SAQRSAFSYWTFCFQFVPV 486
           TQ   R   HSPR   CR   CT +N    +   S+ T C +  PV
Sbjct: 84  TQEAYRKNSHSPRKRQCRNRLCTSYNWIRNKETSSFVTLCHREKPV 129


>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1569

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -2

Query: 551 SLKLPSEILVEVPINSAEECGVTGTN*KQKVQ*LKADRWAEFQQVQPSCLHVYQRGECKQ 372
           SL    +I +++P  S E   +T  + KQK    KA     F  VQP    V Q   C+ 
Sbjct: 506 SLNNECDIRIQLPNVSKEHAKITVDSEKQKTAATKASAPFVFTAVQPKPEAVVQTKNCRS 565

Query: 371 FL--SSGWV 351
            +  S  W+
Sbjct: 566 SVRKSGNWL 574


>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 461 PFAFNSCPLRRIPQRY 508
           PF  N  PLRRIPQ Y
Sbjct: 2   PFKINGVPLRRIPQSY 17


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,679,580
Number of Sequences: 59808
Number of extensions: 370522
Number of successful extensions: 1090
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)