Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060391.seq
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    63   1e-10
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    31   0.58 
AF043700-6|AAB97569.2|  443|Caenorhabditis elegans Hypothetical ...    28   5.4  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 34/55 (61%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
 Frame = +2

Query: 347 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRY 508
           +R  L  GTV I+LAGRH GKRVV +  LP SGLLLVTGP   N  PLRRI Q +
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAF 121



 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 84  RNYDLGNGVMRFSKSKMFHKKAKYK 158
           RN+DL  GV+RFS S++  KK + K
Sbjct: 12  RNFDLSPGVLRFSASRLRLKKGEKK 36



 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 481 PVTPHSSALLIGTSTRISLGNFKLPKHFNDD 573
           P+     A +I TS ++++   K+P+H ND+
Sbjct: 113 PLRRIGQAFVIATSLKVNVSGVKIPEHINDE 143


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 278 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 412
           FYPT+   +A S G P +       PN ++  V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>AF043700-6|AAB97569.2|  443|Caenorhabditis elegans Hypothetical
           protein K09H9.2 protein.
          Length = 443

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = -1

Query: 441 PLGRIPTSTT--LLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIFS*VG*KDFL 268
           P+  I ++TT  LL  CL A    T+P F++  I   C   G    +  + S    KD L
Sbjct: 132 PMKIIESATTVLLLHKCLEAPDSPTLPNFQVKTIGGKCFSTGELCPQVDVLSIGRLKDML 191

Query: 267 RLRGMFW 247
           R + + W
Sbjct: 192 REQELRW 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,996,622
Number of Sequences: 27780
Number of extensions: 270213
Number of successful extensions: 648
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)