Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060391.seq
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   6.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.7  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 236 EWGNQNIPLKRRKSFYP 286
           EW    +P +R K +YP
Sbjct: 200 EWDILGVPAERHKKYYP 216


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 304 TDFLLSGVEGLPTFEGYVLVPPFFSPPICFTT 209
           T FL++  E LP  E   L+  ++   IC  T
Sbjct: 256 TVFLMTIRESLPPTEKTPLISLYYGVSICLVT 287


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 499 SALLIGTSTRISLGNFKLPKHFND 570
           +ALLI  ST  ++   K+P++FN+
Sbjct: 681 NALLILISTVYAVKTRKIPENFNE 704


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 499 SALLIGTSTRISLGNFKLPKHFND 570
           +ALLI  ST  ++   K+P++FN+
Sbjct: 771 NALLILISTVYAVKTRKIPENFNE 794


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 280 LPHSGENPCLIWWPSIQQACTQDPTQ 357
           +P   +NP +  W     AC+  P Q
Sbjct: 373 IPEPSKNPAMGHWQMSCVACSPPPRQ 398


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = +2

Query: 236 EWGNQNIPLKRRKSFYP 286
           EW    +P  R + +YP
Sbjct: 214 EWDILEVPASRNEEYYP 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,800
Number of Sequences: 438
Number of extensions: 3488
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)