Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060391.seq
         (573 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    72   3e-13
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    72   3e-13
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    69   2e-12
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    30   1.3  
At2g27270.1 68415.m03277 expressed protein                             29   1.7  
At1g52820.1 68414.m05970 2-oxoglutarate-dependent dioxygenase, p...    29   2.2  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 71.7 bits (168), Expect = 3e-13
 Identities = 38/84 (45%), Positives = 53/84 (63%)
 Frame = +2

Query: 257 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 436
           P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L 
Sbjct: 57  PVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLA 114

Query: 437 SGLLLVTGPFAFNSCPLRRIPQRY 508
           SGLLLVTGPF  N  PLRR+ Q Y
Sbjct: 115 SGLLLVTGPFKINGVPLRRVNQAY 138


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 71.7 bits (168), Expect = 3e-13
 Identities = 38/84 (45%), Positives = 53/84 (63%)
 Frame = +2

Query: 257 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 436
           P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L 
Sbjct: 57  PVEKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLA 114

Query: 437 SGLLLVTGPFAFNSCPLRRIPQRY 508
           SGLLLVTGPF  N  PLRR+ Q Y
Sbjct: 115 SGLLLVTGPFKINGVPLRRVNQAY 138


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 37/84 (44%), Positives = 52/84 (61%)
 Frame = +2

Query: 257 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 436
           P+++   FYP ++ ++     R   K  + ++ ++  GTV I+LAGR  GKRVV +  L 
Sbjct: 57  PVEKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQLS 114

Query: 437 SGLLLVTGPFAFNSCPLRRIPQRY 508
           SGLLLVTGPF  N  PLRR+ Q Y
Sbjct: 115 SGLLLVTGPFKINGVPLRRVNQAY 138


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 257 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 346
           P++RR+S  P +E++  S GGR  S  H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555


>At2g27270.1 68415.m03277 expressed protein
          Length = 231

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +2

Query: 248 QNIPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 427
           +N P  +R+   PT++K  A   G   SKH R +  +    + C+       GK ++  G
Sbjct: 11  KNGPTTKREE--PTKKKTEAKEEGAAASKHSRVVYSD---KSRCL----SKNGKTIIYFG 61

Query: 428 ILPSGLLLVTGPFAFNSCPLR-RIPQ 502
           +  + +LL+   FAFN   ++ R+P+
Sbjct: 62  VPAALILLIICVFAFNYIAIQPRVPR 87


>At1g52820.1 68414.m05970 2-oxoglutarate-dependent dioxygenase,
           putative similar to AOP1 [Arabidopsis
           lyrata][GI:16118889]; contains Pfam profile PF03171:
           2OG-Fe(II) oxygenase superfamily domain
          Length = 317

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 487 TPHSSALLIGTSTRISLGNFKLPK 558
           +P+   ++ GT TR SLG F +PK
Sbjct: 244 SPYHRVMMTGTETRYSLGLFSIPK 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,463,001
Number of Sequences: 28952
Number of extensions: 257525
Number of successful extensions: 639
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)