Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060390.seq
         (549 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    29   0.027
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   3.1  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   4.1  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    22   4.1  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   5.4  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   7.1  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   7.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.4  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 29.1 bits (62), Expect = 0.027
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +1

Query: 304 SCKTGWI---YEAKTDSCVPK-CTSGCVNGTCEAPEVCTCPE 417
           +CK G++    E+K + C    C +G V  T  A   CTCPE
Sbjct: 325 NCKLGFMGRHCESKVNFCATSPCQNGGVCTTIHAGHKCTCPE 366


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 161 DGKGVATVDVPVIRQRTRLVYNKKRC 238
           D   V T D   +  + + +YN+K+C
Sbjct: 772 DSCTVCTCDAKYLEIKCKRIYNEKQC 797


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 5/16 (31%), Positives = 13/16 (81%)
 Frame = -1

Query: 450 LHAVSASEDQRLWTGA 403
           +H+++ ++D+R W+ A
Sbjct: 255 VHSITHNDDERFWSNA 270


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 33  FNCDKLCKRSRRNA 74
           F C KLCK + + A
Sbjct: 155 FRCTKLCKEANKTA 168


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +1

Query: 436 GHCVEPTCSPACDSYSSCTD 495
           G+C +P   P C+ Y    D
Sbjct: 209 GNCEDPEDVPGCEDYYKDVD 228


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +1

Query: 436 GHCVEPTCSPACDSY 480
           G+C +P   P C+ Y
Sbjct: 209 GNCEDPEDVPGCEDY 223


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 327 RGEDRQLCTEMHER 368
           +GEDR LCT + +R
Sbjct: 577 QGEDRWLCTLLLQR 590


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 327 RGEDRQLCTEMHER 368
           +GEDR LCT + +R
Sbjct: 837 QGEDRWLCTLLLQR 850


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 327 RGEDRQLCTEMHER 368
           +GEDR LCT + +R
Sbjct: 837 QGEDRWLCTLLLQR 850


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 327 RGEDRQLCTEMHER 368
           +GEDR LCT + +R
Sbjct: 810 QGEDRWLCTLLLQR 823


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 327 RGEDRQLCTEMHER 368
           +GEDR LCT + +R
Sbjct: 810 QGEDRWLCTLLLQR 823


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 327 RGEDRQLCTEMHER 368
           +GEDR LCT + +R
Sbjct: 837 QGEDRWLCTLLLQR 850


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 327 RGEDRQLCTEMHER 368
           +GEDR LCT + +R
Sbjct: 837 QGEDRWLCTLLLQR 850


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 399 LGRLASSVHAPARAFRYTAVGLRLVYPASL 310
           + ++A+S H P+        G R  YP++L
Sbjct: 181 MSQVAASWHTPSMYPLSPGAGFRSPYPSAL 210


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 399 LGRLASSVHAPARAFRYTAVGLRLVYPASL 310
           + ++A+S H P+        G R  YP++L
Sbjct: 73  MSQVAASWHTPSMYPLSPGAGFRSPYPSAL 102


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,521
Number of Sequences: 336
Number of extensions: 2796
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)