Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060390.seq
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    29   0.60 
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    26   3.2  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    26   4.2  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    25   7.3  
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    25   9.7  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    25   9.7  
SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po...    25   9.7  

>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 48  LCKRSRRNANIELCCVEMFYQFCYSSSANDHCFVMP 155
           LCK+  RNA    CC ++F + C  ++  D  F  P
Sbjct: 284 LCKKLARNACRTPCCDKLFCEECIQTALLDSDFECP 319


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 292 QCSRMIRL*RTSRVSLAATSFLIVDQTSALPYDRYVHGGNSF 167
           QC ++    +T  +S+  +  L+ +    LP  +YV G N F
Sbjct: 505 QCVKVTEATKTLELSVILSERLVYETALKLPVIKYVKGDNRF 546


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 404 HTSGASQVPFTHPLVHFGTQLSVFA-SYIQPVLHD*LFSMLTYDSV 270
           ++  ASQ P T+P  H   Q+S     Y  P L D   S+L  D +
Sbjct: 18  NSQNASQPPETYPFYHEVRQMSQHPWMYEDPELQDYALSILPLDKL 63


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 283 VSIEKSQSCKTGWIYEAKTDSCVPKCTSGCVNGTCEAPE 399
           +S+ +     TG IYEA T++  PK  S         PE
Sbjct: 330 MSLARGLDYYTGIIYEAVTEASAPKIKSSAEKKKSADPE 368


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 256 GSCVITESYVSIEKSQSCKTGWIYEAKTDSCVPK 357
           G C IT  + + + + SC   W  + K DS V K
Sbjct: 215 GDCKITLVHPNEQPNSSCLEYWGQDFKEDSLVQK 248


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 27  CGFNCDKLCKRSRRNANIELCCVEMFYQFCYSSSANDHCFV 149
           CG NC +    + +N   ++ C   + Q  +SSS N   F+
Sbjct: 196 CGVNCSQTWYHNLKNKKYDI-CPNCYKQGRFSSSFNSSDFL 235


>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 439

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -1

Query: 171 PFP-SFMASQNNDRSPMTNNRTDKTFPHSIALCSRSDAI-VYRA 46
           PFP ++ A+   +R P+T  R+ +T PH  A+ +   +  VY A
Sbjct: 46  PFPMNWGAATAEERGPITVARSIETLPHRNAVGAHGGSYSVYNA 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,206,337
Number of Sequences: 5004
Number of extensions: 43850
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)