Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060390.seq
         (549 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0612 - 4501595-4501619,4501752-4501906,4502051-4502092,450...    29   2.4  
07_03_1583 - 27898375-27898436,27898455-27898539,27898621-278987...    29   3.2  
04_04_1335 - 32730516-32730570,32730655-32731154,32731235-327314...    28   4.3  
07_03_1393 - 26245105-26246862                                         28   5.6  
06_01_0005 - 125809-126339                                             28   5.6  
09_03_0180 - 13141083-13141808                                         27   7.5  
07_01_0003 + 16711-17016,17107-17177,17269-17461,17929-17984,185...    27   7.5  
05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950...    27   9.9  

>03_01_0612 -
           4501595-4501619,4501752-4501906,4502051-4502092,
           4502238-4502279,4502365-4502464,4502825-4502889,
           4503140-4503217
          Length = 168

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 318 LDIRGEDRQLCTEMHERVRERN--LRGARGVHLSRASGPQTRTL 443
           LD++GED   C  + E + E +  LR  RG  L R +  Q + L
Sbjct: 23  LDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQEL 66


>07_03_1583 -
           27898375-27898436,27898455-27898539,27898621-27898768,
           27899009-27899028,27899135-27899236,27899743-27899812,
           27899956-27900012,27902324-27902484,27902742-27902761,
           27902997-27903069,27903077-27903169,27903456-27903496,
           27903597-27903858
          Length = 397

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = +3

Query: 303 IMQDWLDIRGEDRQLCTEMHERVRERNLRGARGVHLSRASGPQTRTLRGAH 455
           I+ DW+D   ++R +  +MH    E+ L+G+ GV L+  +  +TR  +  H
Sbjct: 133 IVTDWVDY--QNRLVRGDMHS---EKPLKGSGGVSLANGNTTETRLRKRCH 178


>04_04_1335 -
           32730516-32730570,32730655-32731154,32731235-32731416,
           32732673-32732779,32733364-32733395,32733499-32733542,
           32733816-32733977,32734356-32734755
          Length = 493

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 59  IASEREHRAMLCGNVLSVLLFVIGERSLFCDAIKDGK 169
           +A +  HR  L  +VLSV +F     +   DAIK GK
Sbjct: 421 VADQVGHRVRLSPSVLSVFVFSSAAIAFTYDAIKSGK 457


>07_03_1393 - 26245105-26246862
          Length = 585

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 340 DSCVPKCTSGCVNGTCEAPEVCTCPEPLVL 429
           D      T+  VNGTC+      C +P VL
Sbjct: 127 DQATATATAAAVNGTCDPDAPLNCSDPRVL 156


>06_01_0005 - 125809-126339
          Length = 176

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 151 CHKRWERSCHRGRTG 195
           CH+RW R   RGR G
Sbjct: 156 CHRRWRRRARRGRGG 170


>09_03_0180 - 13141083-13141808
          Length = 241

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 362 VHFGTQLSVFASYIQPVLHD*LFSMLTYD-SVITHEPC 252
           V  GTQL   A    PVLHD L  +L  D  +  ++PC
Sbjct: 38  VEAGTQLIPAAPISNPVLHDGLLYVLGGDGKLAVYDPC 75


>07_01_0003 +
           16711-17016,17107-17177,17269-17461,17929-17984,
           18511-18588,18873-18929,19396-19903
          Length = 422

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 412 PEPLVLRRGHCVEPTCSPACDSYSSCTDFNVCTA 513
           P PL L R H  +P C P+ +SY + TD +  +A
Sbjct: 29  PYPLRLHRRHPQKPLCLPS-ESYPADTDADASSA 61


>05_03_0356 +
           12894195-12894237,12894347-12894484,12894868-12895018,
           12895399-12895526,12895704-12895840,12896742-12896847,
           12898659-12898762,12899159-12899281,12899620-12899700,
           12900159-12900304,12902171-12902243,12902970-12903060,
           12904978-12905018,12906079-12906153,12906402-12906569,
           12907638-12907676,12907759-12907847,12908014-12908078,
           12908794-12908840,12908924-12908983,12909168-12909239,
           12910143-12910172,12910526-12910617,12910719-12910802,
           12911941-12912046,12912171-12912233,12912776-12912870,
           12913000-12913180
          Length = 875

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 22/73 (30%), Positives = 30/73 (41%)
 Frame = +1

Query: 253 HGSCVITESYVSIEKSQSCKTGWIYEAKTDSCVPKCTSGCVNGTCEAPEVCTCPEPLVLR 432
           H S +IT   V+    Q CK  W   A+    +PK  S  V    + P V    +  +L 
Sbjct: 116 HVSRIITNEEVNALLKQKCKFKWEVPAED---IPK--SKWVGTAAKPPAVIHNLDSNILD 170

Query: 433 RGHCVEPTCSPAC 471
             HC +   SP C
Sbjct: 171 FCHCWDAAGSPHC 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,120,691
Number of Sequences: 37544
Number of extensions: 319925
Number of successful extensions: 924
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)