Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060390.seq
(549 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_12758| Best HMM Match : EGF (HMM E-Value=2.5e-15) 40 0.001
SB_6849| Best HMM Match : EGF_2 (HMM E-Value=9.3e-11) 39 0.002
SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14) 37 0.009
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.067
SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_58812| Best HMM Match : Paramecium_SA (HMM E-Value=3.4) 33 0.15
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 32 0.27
SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.47
SB_48962| Best HMM Match : Cadherin (HMM E-Value=0) 31 0.62
SB_16910| Best HMM Match : EGF (HMM E-Value=0) 30 1.1
SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_55591| Best HMM Match : TIL (HMM E-Value=4.2e-09) 30 1.4
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) 29 3.3
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34) 28 4.4
SB_2571| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_47465| Best HMM Match : EGF_CA (HMM E-Value=2.4e-08) 28 5.8
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_31737| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_13699| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 28 5.8
SB_57009| Best HMM Match : Zona_pellucida (HMM E-Value=0) 27 7.6
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 27 7.6
SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12) 27 7.6
SB_31970| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_30517| Best HMM Match : HLH (HMM E-Value=6.9e-15) 27 7.6
SB_27463| Best HMM Match : C_tripleX (HMM E-Value=0.11) 27 7.6
>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1487
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Frame = +1
Query: 307 CKTGWIYEAKTDSCVPKCTSGCVNGTCEAPEVCTCP----------EPLVLRRGHCVEPT 456
CK G+ +A + CVP CT GCVNG C +P+VCTC E L GHC T
Sbjct: 220 CKPGY-EQALSGQCVPVCTQGCVNGKCTSPDVCTCSFGWTGPNCSVECLCNGHGHCANAT 278
Query: 457 CSPACDSYSSCTDFNVC 507
C + T + C
Sbjct: 279 KRDVCTDCRNHTTGSSC 295
>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1530
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +1
Query: 253 HGSCVITESYVSIEKSQSCKTGWIYEAKTDSCVPKCTSGCVNGTCEAPEVCTCP 414
+G+C+ T+ Y +SC+ G SCVP C +G GTC +P C CP
Sbjct: 317 NGTCICTKQYTG----KSCEHG--INLVLSSCVPFCQNG---GTCSSPNTCKCP 361
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 358 CTSGCVNGTCEAPEVCTCPEPLVLRRGHCVEP-TCS 462
C S CV+G C CPE + RG CV+P CS
Sbjct: 783 CNSKCVDG-------CFCPEGKIQDRGKCVDPGQCS 811
Score = 27.5 bits (58), Expect = 7.6
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +1
Query: 346 CVPKCTSG--CVNGTCEAPEVCTCPEPLVLRRGHCVEPTCSPACDSYSSCTDFN-VCT 510
C+ C +G C+NG C VC + C E C P C + +C + +CT
Sbjct: 274 CLYPCMNGGSCINGKC----VCA----VGFTGNTCEERLCDPPCQNSGTCNNGTCICT 323
>SB_12758| Best HMM Match : EGF (HMM E-Value=2.5e-15)
Length = 165
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 358 CTSGCVNG-TCEAPEVCTCPEPLVLRRGHCVEPTCSPACDSYSSCTDFNVC 507
C +GC NG C P+VC C C+ P C P+C + C N C
Sbjct: 100 CRNGCYNGGECVRPDVCKCRAGY--EGPLCLTPVCKPSCVNGGYCVGSNTC 148
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Frame = +1
Query: 307 CKTGWIYEAKTDSCVPKCTSGCVNG-TCEAPEVCTCPEPLVLRRGHCVEPTCSPACDSYS 483
C G+ + + +C C C G TC AP C CP+ C C C +
Sbjct: 53 CPAGFTGDGR--ACTRICDHPCPYGMTCVAPRTCRCPKGYY--GIGCRRAFCRNGCYNGG 108
Query: 484 SCTDFNVC 507
C +VC
Sbjct: 109 ECVRPDVC 116
>SB_6849| Best HMM Match : EGF_2 (HMM E-Value=9.3e-11)
Length = 439
Score = 39.1 bits (87), Expect = 0.002
Identities = 30/90 (33%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Frame = +1
Query: 253 HGSCVITESYVSIEKSQSCKTGWIYEAKTDSCVP---------KCTSGCVNGTCEA-PEV 402
HGSC I+ +KS +C GW+ S P KCT CV GTC + P
Sbjct: 82 HGSCQISAG----KKSCTCDYGWLNNVGDASFTPGRGPCTKIWKCTEPCVYGTCPSDPFK 137
Query: 403 CTCPEPLVLRRGHCVE-PTCSP--ACDSYS 483
C C P + ++ P C P CD S
Sbjct: 138 CECRAPYTGTQCDTIKCPECCPPETCDCSS 167
>SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14)
Length = 635
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 307 CKTGWIYEAKTDSC-VPKCTSGCVNGTCEAPEVCTC 411
C +GW +SC P C+ GC G C P+ CTC
Sbjct: 84 CCSGWAQSG--NSCPTPICSKGCAQGVCVKPDNCTC 117
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 34.3 bits (75), Expect = 0.067
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = +1
Query: 298 SQSCKTGWIYEAKTDSCVPKCTSGCVNGTCEAPEVCTCPEPLVLRRGHCVEPTCSPACDS 477
S C TG+ +A + C+P C SGC C CT + H TC P+C S
Sbjct: 655 SYECSTGYYGDAASGLCLP-CQSGC--SACHVTGQCTA----CMLGLHLYNKTCVPSCPS 707
>SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 307 CKTGWIYEAKTDSCVPKCTSGCVNGTCEAPEVCTC 411
C G+ + KT +C C CV+GTC + +C C
Sbjct: 63 CNPGYTGDGKT-ACNKTCYPACVHGTCNSNYLCDC 96
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 33.5 bits (73), Expect = 0.12
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Frame = +1
Query: 256 GSCVITESYVSIEKSQSCKTGWIYEAKTDS-CVPKC--TSGCVNGTCEAPEVCTCPEPLV 426
GS V+ + + + +CK +I A + C+PK G ++ T ++ E CP P
Sbjct: 1290 GSLVLQDDEKNCGEPSTCKPNYISCASMKAICIPKMWRCDGMLDCTDKSDEE-DCP-PCK 1347
Query: 427 LRRGHCVEPTC---SPACDSYSSCTD 495
+ C C P CD Y +CTD
Sbjct: 1348 ENQFRCDNGQCIDGDPRCDKYKNCTD 1373
>SB_58812| Best HMM Match : Paramecium_SA (HMM E-Value=3.4)
Length = 327
Score = 33.1 bits (72), Expect = 0.15
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Frame = +1
Query: 277 SYVSIEKSQSCKTGWIYEAKTDSCVPK--CTSGCVNG-TCEAPEVCTCPEPLVLRRGHCV 447
SY++ S++C T + +CVP CT+ ++ C + CT +V+ +CV
Sbjct: 132 SYLNCVPSKTC-TAMVISYL--NCVPSKTCTAMVISYLNCVPSKTCTA---MVISYLNCV 185
Query: 448 -EPTCSPACDSYSSCTDFNVCTA*TTRSL*TAPS 546
TC+ SY +C F CTA L PS
Sbjct: 186 PSKTCTAMVISYLNCVPFKTCTAMVISYLNCVPS 219
Score = 30.7 bits (66), Expect = 0.82
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Frame = +1
Query: 268 ITESYVSIEKSQSCKTGWIYEAKTDSCVP--KCTSGCVNG-TCEAPEVCTCPEPLVLRRG 438
+ +SY++ S++C T + +CVP CT+ ++ C + CT +V+
Sbjct: 1 MVKSYLNCVPSKTC-TAMVKSYL--NCVPFKTCTAMVISYLNCVPSKTCTA---MVISYL 54
Query: 439 HCV-EPTCSPACDSYSSCTDFNVCTA*TTRSL*TAPS 546
+CV TC+ SY +C CTA L PS
Sbjct: 55 NCVPSKTCTAMVKSYLNCVPSKTCTAMVISYLNCVPS 91
Score = 30.7 bits (66), Expect = 0.82
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Frame = +1
Query: 268 ITESYVSIEKSQSCKTGWIYEAKTDSCVPK--CTSGCVNG-TCEAPEVCTCPEPLVLRRG 438
+ +SY++ S++C T + +CVP CT+ ++ C + CT +V+
Sbjct: 65 MVKSYLNCVPSKTC-TAMVISYL--NCVPSKTCTAMVISYLNCVPSKTCTA---MVISYL 118
Query: 439 HCV-EPTCSPACDSYSSCTDFNVCTA*TTRSL*TAPS 546
+CV TC+ SY +C CTA L PS
Sbjct: 119 NCVPSKTCTAMVISYLNCVPSKTCTAMVISYLNCVPS 155
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +1
Query: 343 SCVPK--CTSGCVNG-TCEAPEVCTCPEPLVLRRGHCV-EPTCSPACDSYSSCTDFNVCT 510
+CVP CT+ ++ C + CT +V+ +CV TC+ SY +C CT
Sbjct: 215 NCVPSKTCTAMAISYLNCVPSKTCTA---MVISYLNCVPSKTCTAMVKSYLNCVPSKTCT 271
Query: 511 A*TTRSL*TAPS 546
A L PS
Sbjct: 272 AMVISYLNCVPS 283
Score = 29.9 bits (64), Expect = 1.4
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +1
Query: 277 SYVSIEKSQSCKTGWIYEAKTDSCVPK--CTSGCVNG-TCEAPEVCTCPEPLVLRRGHCV 447
SY++ S++C T + +CVP CT+ ++ C + CT +V+ +CV
Sbjct: 84 SYLNCVPSKTC-TAMVISYL--NCVPSKTCTAMVISYLNCVPSKTCTA---MVISYLNCV 137
Query: 448 -EPTCSPACDSYSSCTDFNVCTA*TTRSL*TAPS 546
TC+ SY +C CTA L PS
Sbjct: 138 PSKTCTAMVISYLNCVPSKTCTAMVISYLNCVPS 171
Score = 29.5 bits (63), Expect = 1.9
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +1
Query: 277 SYVSIEKSQSCKTGWIYEAKTDSCVPK--CTSGCVNG-TCEAPEVCTCPEPLVLRRGHCV 447
SY++ S++C T + +CVP CT+ ++ C + CT +V+ +CV
Sbjct: 52 SYLNCVPSKTC-TAMVKSYL--NCVPSKTCTAMVISYLNCVPSKTCTA---MVISYLNCV 105
Query: 448 -EPTCSPACDSYSSCTDFNVCTA*TTRSL*TAPS 546
TC+ SY +C CTA L PS
Sbjct: 106 PSKTCTAMVISYLNCVPSKTCTAMVISYLNCVPS 139
Score = 29.1 bits (62), Expect = 2.5
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +1
Query: 277 SYVSIEKSQSCKTGWIYEAKTDSCVPK--CTSGCVNG-TCEAPEVCTCPEPLVLRRGHCV 447
SY++ S++C T + +CVP CT+ ++ C + CT +V+ +CV
Sbjct: 164 SYLNCVPSKTC-TAMVISYL--NCVPSKTCTAMVISYLNCVPFKTCTA---MVISYLNCV 217
Query: 448 -EPTCSPACDSYSSCTDFNVCTA*TTRSL*TAPS 546
TC+ SY +C CTA L PS
Sbjct: 218 PSKTCTAMAISYLNCVPSKTCTAMVISYLNCVPS 251
Score = 27.9 bits (59), Expect = 5.8
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Frame = +1
Query: 277 SYVSIEKSQSCKTGWIYEAKTDSCVPK--CTSGCVNG-TCEAPEVCTCPEPLVLRRGHCV 447
SY++ S++C T + +CVP CT+ + C + CT +V+ +CV
Sbjct: 36 SYLNCVPSKTC-TAMVISYL--NCVPSKTCTAMVKSYLNCVPSKTCTA---MVISYLNCV 89
Query: 448 -EPTCSPACDSYSSCTDFNVCTA*TTRSL*TAPS 546
TC+ SY +C CTA L PS
Sbjct: 90 PSKTCTAMVISYLNCVPSKTCTAMVISYLNCVPS 123
Score = 27.9 bits (59), Expect = 5.8
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Frame = +1
Query: 277 SYVSIEKSQSCKTGWIYEAKTDSCVPK--CTSGCVNG-TCEAPEVCTCPEPLVLRRGHCV 447
SY++ S++C I +CVP CT+ ++ C + CT +V +CV
Sbjct: 212 SYLNCVPSKTCTAMAISYL---NCVPSKTCTAMVISYLNCVPSKTCTA---MVKSYLNCV 265
Query: 448 -EPTCSPACDSYSSCTDFNVCTA*TTRSL*TAPS 546
TC+ SY +C CTA L PS
Sbjct: 266 PSKTCTAMVISYLNCVPSKTCTAMAISYLNCVPS 299
Score = 27.5 bits (58), Expect = 7.6
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Frame = +1
Query: 277 SYVSIEKSQSCKTGWIYEAKTDSCVPK--CTSGCVNG-TCEAPEVCTCPEPLVLRRGHCV 447
SY++ S++C T + +CVP CT+ + C + CT +V+ +CV
Sbjct: 228 SYLNCVPSKTC-TAMVISYL--NCVPSKTCTAMVKSYLNCVPSKTCTA---MVISYLNCV 281
Query: 448 -EPTCSPACDSYSSCTDFNVCTA 513
TC+ SY +C CTA
Sbjct: 282 PSKTCTAMAISYLNCVPSKTCTA 304
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 32.3 bits (70), Expect = 0.27
Identities = 20/46 (43%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 355 KCTSGCVNGTCEAPEVCTCPEPLVLRRGHCVEPT-CSPACDSYSSC 489
KCTS C G CT P P L CV PT + ACD Y C
Sbjct: 1496 KCTSSCGKGVRSRSRSCTAPAP-ELGGKPCVGPTEQTMACD-YGDC 1539
>SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 31.5 bits (68), Expect = 0.47
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +1
Query: 307 CKTGWI---YEAKTDSCVPKCTSGC-VNGTCEAPEVCTCPEPLVLRRGHCVEPTCSPACD 474
C+ G+I YE + + C GC N C VC C + + G+ +P C+P C
Sbjct: 523 CRAGYIGNGYECEKEEC-----DGCNPNAHC-LKGVCVCFDHYI-GNGYNCQPPCTPTCH 575
Query: 475 SYSSC 489
+ S+C
Sbjct: 576 APSTC 580
>SB_48962| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2225
Score = 31.1 bits (67), Expect = 0.62
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Frame = +1
Query: 367 GC-VNGTCEAPEVCT----CPEPLVLRRGHCVEPTCSPACDSYSSCT 492
GC +G C+ P+ C C E RR C+ P C +Y C+
Sbjct: 1953 GCRTSGACQRPQACPLASRCIETFTDRRCECLPGHSGPDCKAYIKCS 1999
>SB_16910| Best HMM Match : EGF (HMM E-Value=0)
Length = 1552
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 301 QSCKT-GWIYEAKTDSCVPKCTSGCVNGTCEAPEVCTCPEPLVLRRGHCVEPTCSPACDS 477
+ C T ++ +T + V C+N + + ++C+ V ++G C++P C PA
Sbjct: 1199 EDCNTCSCVHGTRTCTKVVCGPDNCLNSSTVSNDICSMGSVCVPKKGTCLKPPC-PA--- 1254
Query: 478 YSSCTDFNV 504
Y C ++V
Sbjct: 1255 YGECQGWSV 1263
>SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1286
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = +1
Query: 346 CVPKCTSGCVNG-TCEAPEVCTCPEPLVLRRGHCVEPTCSPACDSYSSCTD 495
C C C NG TC P TC P R C + C P C + C +
Sbjct: 434 CPTICKVPCENGGTCIDPVSNTCQCPPNWRGATCKQAECVPECLNGGVCVN 484
>SB_55591| Best HMM Match : TIL (HMM E-Value=4.2e-09)
Length = 133
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 358 CTSGCVNGTCEAPEVCTCPEPLVLRRGHCVEP-TCS 462
C S CV+G C CPE + RG CV+P CS
Sbjct: 84 CNSKCVDG-------CFCPEGKIQDRGKCVDPGQCS 112
>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1146
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 340 DSCVPKCTSGCVNGTCEAPEVCTCP 414
+ C PKC +G G C P C CP
Sbjct: 734 EMCSPKCQNG---GVCIGPNTCKCP 755
>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 441
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 298 SQSCKTGWIYEAKTDS--CVPKCTSGCVNGTCEAPEVCT 408
+Q C +G + +S C+ CTS C N C + CT
Sbjct: 83 NQRCLSGGCTDVACNSHTCLQTCTSNCTNMECHSNTKCT 121
>SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 584
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 361 TSGCVNGTCEAPEVCTC 411
++GC+ G+C+ P VCTC
Sbjct: 82 SNGCIQGSCDGP-VCTC 97
>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
Length = 3369
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +3
Query: 24 NCGFNCDKL--CKRSRRNANIELCCVEMFYQFCYSSSANDHC 143
NCG+ CD C + + C + FY CY+ + +HC
Sbjct: 2333 NCGW-CDSAQQCMPGNQTRPHQEPCPDWFYHNCYTVGSENHC 2373
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 358 CTSGCVNGTCEAPE--VCTCPEPLVLRRGHCVEPTC 459
C+ CV+G PE VCTC + + +GH TC
Sbjct: 434 CSVYCVHGNATGPEGDVCTCHDDIT--KGHWNGSTC 467
>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
Length = 1790
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 464 GEHVGSTQCPRLRTRGSGQVHTSGASQV 381
G G+ C R R GQ H SG Q+
Sbjct: 1539 GNSSGTNTCSRYRANHPGQTHASGTGQI 1566
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 464 GEHVGSTQCPRLRTRGSGQVHTSGASQV 381
G+ G+ C R SGQ H SG Q+
Sbjct: 1615 GKSSGTNTCSRYGANHSGQTHASGTGQI 1642
>SB_2571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 56 TIASEREHRAMLCGNVLSVLLFVI---GERSLFCDAIKDGKGVATVDVPVI 199
T+A A L G + LF I GER + C AIK G DV +I
Sbjct: 225 TVARLHAQAAQLLGRAIGAGLFAITPAGERGMCCKAIKLGFPCVNGDVSLI 275
>SB_47465| Best HMM Match : EGF_CA (HMM E-Value=2.4e-08)
Length = 263
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Frame = +1
Query: 307 CKTGWIYEAK----TDSCV-PKCTSG---CVNGTCEAPEVCTCPEPLVLRRGHCV 447
CK G++ E + D CV P+ S C+N +CTC EP V G CV
Sbjct: 140 CKKGFVREPEGCVDIDECVYPRVCSEHAKCIN--THGSYLCTCVEPYVSGPGGCV 192
>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = +1
Query: 304 SCKTGWIYEAKTDSCVPKCTSGCVNGTCEAPEVCTCPEPLVLRRGH--CVEPTCSPACDS 477
+C GW+ +A D CV +G C+ T V GH CV C ACD+
Sbjct: 1353 NCSQGWMGQACEDLCVHGTQVPMDSGNCQCDACFTGRGCNVECSGHGQCVNGAC--ACDT 1410
>SB_31737| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Frame = +1
Query: 340 DSCVPKCTSGCV-NGTCE---APEVCTCPEPLVLRRGHCVEPTCSPACDSYSS 486
D C K T C N CE C CP+ + G C T P D+ S
Sbjct: 179 DECADKSTHDCKKNEICENFAGGFECICPDGFTVTEGVCKGRTYPPVTDTCQS 231
>SB_13699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/74 (25%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
Frame = -2
Query: 524 RVVHAVHTLKSVQLL*ESQAGEHVGSTQCPRLRTRGSGQVHTSGASQVPFTHPLVH-FGT 348
R VHA + + ++ H T C R S H P+ H H T
Sbjct: 318 RAVHATYITLHAPYVHTTRHVHHTTRTVCAHCTPRSSHYTHRMRTLHAPYAHTTRHVHHT 377
Query: 347 QLSVFASYIQPVLH 306
L+V A Y H
Sbjct: 378 ILTVCAHYTPRTAH 391
>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
Length = 1023
Score = 27.9 bits (59), Expect = 5.8
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Frame = +1
Query: 262 CVITESYVSIEKSQSCKTGWIYEAKTDSCVPKCTSG--CVNGTCEAPEVCTCPEPLVLRR 435
C E + E Q C TG+ SC P C+ G C N T AP C+ E +
Sbjct: 335 CAAGEYSNTGEACQPCTTGYFSLGGASSCTP-CSIGHQCSNQTI-APVRCSPGEYAPAGQ 392
Query: 436 GHCVEPTCSPACDSYSSCTD 495
+C AC++ + C D
Sbjct: 393 ANCT------ACEAGTYCPD 406
>SB_57009| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 564
Score = 27.5 bits (58), Expect = 7.6
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Frame = +1
Query: 319 WIYEAKTDSCVPK---------CTSGCVNGTCEAPEVCTCPEPLVLRRGHCVEPTCSPAC 471
W++ ++ SCV + C+ CVN C CP+PLVL + + TC A
Sbjct: 100 WLFGQRSISCVDRNECRFRKGGCSHKCVNTI--GGYHCECPDPLVLDKDN---RTCR-AV 153
Query: 472 DSYSSCTDFNV 504
+CTD ++
Sbjct: 154 GLVLNCTDHDI 164
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 295 KSQSCKTGWIYEA-KTDSCVPKCTSGCVNGTCEAPEVCTCPEPLVLRRGHCVEP 453
+ +CKT + + D+C C SG TC++P TC E CVEP
Sbjct: 5815 RQNACKTNTLITVVRRDACPGPC-SGV---TCDSPPYSTCKEQDDKPTCVCVEP 5864
>SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)
Length = 979
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +3
Query: 309 QDWLDIRGED-RQLCTEM--HERVRERNLRGARGVH 407
+D + +R E+ RQLC++ H R RE +L+ A +H
Sbjct: 193 RDTIRLRSEELRQLCSDFTEHARKREHHLKVAMDIH 228
>SB_31970| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +1
Query: 229 EKMSRQD*HGSCVITESYVSIEKSQSCKTGWIYEAKTDSCVPKCTSGCVNGTCEAPEVCT 408
E + RQ + ++ +EK +TG IYE +T + C + NG + +
Sbjct: 46 EGLRRQTAKKLVFLIDTIQGVEKKTLDQTGTIYEVQTQLALSNCPN---NGEYKFARIDI 102
Query: 409 CP-EPL 423
CP +PL
Sbjct: 103 CPVDPL 108
>SB_30517| Best HMM Match : HLH (HMM E-Value=6.9e-15)
Length = 178
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 476 ESQAGEHVGSTQCPRLRTRGSGQVHTSGAS 387
ES GEH G + CP + +HT+ +S
Sbjct: 146 ESSTGEHGGPSSCPSMAVAPMMLIHTTPSS 175
>SB_27463| Best HMM Match : C_tripleX (HMM E-Value=0.11)
Length = 123
Score = 27.5 bits (58), Expect = 7.6
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Frame = +1
Query: 307 CKTGWIYEAKTDSCVPKC---TSGCVNGTCEAPEVCTCPEPLVLRRGHCVEPTCSPACDS 477
CK + K C+P T G + T P PL PTC P+CD+
Sbjct: 10 CKKFCLPSCKRSCCLPNAPNYTPGQFPELMQYQASMTAPPPLPQACPPSCNPTCYPSCDA 69
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,899,165
Number of Sequences: 59808
Number of extensions: 393052
Number of successful extensions: 1347
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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