Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060390.seq
         (549 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42620.1 68418.m05188 expressed protein                             29   2.7  
At5g17900.1 68418.m02099 expressed protein                             28   3.6  
At2g15750.1 68415.m01803 hypothetical protein                          27   8.3  
At1g18390.1 68414.m02297 protein kinase family protein contains ...    27   8.3  

>At5g42620.1 68418.m05188 expressed protein
          Length = 841

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +1

Query: 343 SCVPKCTSGC-VNGTCEAPEVCTCPEPLVLRRGH-CVEPTCSPACDSYSSCTDFNVC 507
           S + +C + C  NG C   + C C   L+   GH C   +C   C+ +  CT   VC
Sbjct: 598 SVLGQCPNSCNFNGDCVDGK-CRC---LLGYHGHDCRNRSCPNNCNGHGKCTTQGVC 650


>At5g17900.1 68418.m02099 expressed protein
          Length = 435

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +3

Query: 255 RLVRYNRIIREH*EESIMQDWLDIRGEDRQLCTEMHERVRERNLRGAR 398
           R +R   II    EES  Q+  D   +D     E   R+RE+NLR A+
Sbjct: 95  RRIRQAEIIYTEEEESRNQENRD-EDDDEDALEERRRRIREKNLRRAQ 141


>At2g15750.1 68415.m01803 hypothetical protein 
          Length = 280

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 412 PEPLVLRRGHCVEPTC 459
           P+PLV+ R H ++P C
Sbjct: 166 PDPLVIPRSHSIDPVC 181


>At1g18390.1 68414.m02297 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 605

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 310 KTGWIYEAKTDSCVPKCTSGCVNGTCEAPEVCTCPE 417
           K G++     +SC    TSG   GT +   VC CP+
Sbjct: 207 KRGFVLNWTANSCFRCITSGGRCGTDQQEFVCLCPD 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,817,485
Number of Sequences: 28952
Number of extensions: 244216
Number of successful extensions: 585
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)