Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060389.seq
(569 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 102 4e-23
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 102 4e-23
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 74 2e-14
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 56 3e-09
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 45 7e-06
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 44 2e-05
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 40 2e-04
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 34 0.017
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 34 0.017
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 34 0.017
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 30 0.21
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 28 1.1
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 1.1
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 28 1.1
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 27 2.6
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 3.4
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 26 4.5
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 25 5.9
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.9
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl... 25 5.9
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 5.9
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 5.9
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 5.9
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 7.8
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 25 7.8
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 102 bits (244), Expect = 4e-23
Identities = 47/66 (71%), Positives = 55/66 (83%)
Frame = +3
Query: 57 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 236
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60
Query: 237 KDEQDR 254
DEQ+R
Sbjct: 61 ADEQER 66
Score = 91.1 bits (216), Expect = 1e-19
Identities = 50/85 (58%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 ITIKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRVT 433
+TIKSTAIS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEVTAALRVT
Sbjct: 68 VTIKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVT 122
Query: 434 DGALXXXXXXXXXXXQTETVLRQAI 508
DGAL QTETVLRQA+
Sbjct: 123 DGALVVVDTIEGVCVQTETVLRQAL 147
Score = 32.7 bits (71), Expect = 0.039
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +1
Query: 511 ERIKPILFMNKMDRALLEL 567
ERI+P++ +NK+DRALLEL
Sbjct: 149 ERIRPVVVVNKVDRALLEL 167
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 102 bits (244), Expect = 4e-23
Identities = 47/66 (71%), Positives = 55/66 (83%)
Frame = +3
Query: 57 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 236
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60
Query: 237 KDEQDR 254
DEQ+R
Sbjct: 61 ADEQER 66
Score = 91.1 bits (216), Expect = 1e-19
Identities = 50/85 (58%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 ITIKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRVT 433
+TIKSTAIS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEVTAALRVT
Sbjct: 68 VTIKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVT 122
Query: 434 DGALXXXXXXXXXXXQTETVLRQAI 508
DGAL QTETVLRQA+
Sbjct: 123 DGALVVVDTIEGVCVQTETVLRQAL 147
Score = 32.7 bits (71), Expect = 0.039
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +1
Query: 511 ERIKPILFMNKMDRALLEL 567
ERI+P++ +NK+DRALLEL
Sbjct: 149 ERIRPVVVVNKVDRALLEL 167
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 73.7 bits (173), Expect = 2e-14
Identities = 43/83 (51%), Positives = 56/83 (67%)
Frame = +2
Query: 257 ITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 436
IT+KS+AIS+FF++ I+ D++ + EK +LINLIDSPGHVDFSSEV++A R+ D
Sbjct: 68 ITMKSSAISLFFKV-------ISQNDEK-RVEKDYLINLIDSPGHVDFSSEVSSASRLCD 119
Query: 437 GALXXXXXXXXXXXQTETVLRQA 505
GA QT TVLRQA
Sbjct: 120 GAFVLVDAVEGVCSQTITVLRQA 142
Score = 63.3 bits (147), Expect = 2e-11
Identities = 28/60 (46%), Positives = 41/60 (68%)
Frame = +3
Query: 75 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 254
+++ + + NIRN +++AHVDHGK+TL DSL++ GII+ AG RF D R+DE R
Sbjct: 7 EKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITR 66
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 511 ERIKPILFMNKMDRALLEL 567
+RIK IL +NKMDR + EL
Sbjct: 145 DRIKVILVINKMDRLITEL 163
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 56.4 bits (130), Expect = 3e-09
Identities = 34/82 (41%), Positives = 44/82 (53%)
Frame = +2
Query: 257 ITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 436
ITI+S A +E + N Q+ EK + IN+ID+PGH+DF+ EV ALRV D
Sbjct: 113 ITIQSAATHCTWERTVDQIE--ANEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLD 170
Query: 437 GALXXXXXXXXXXXQTETVLRQ 502
GA+ QT TV RQ
Sbjct: 171 GAVLVLCAVSGVQSQTITVDRQ 192
Score = 35.1 bits (77), Expect = 0.007
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 63 NFTVDEIRGMMDKKR--NIRNMSVIAHVDHGKSTLTDSLVSKAGII 194
N + E DKKR IRN+ + AH+D GK+T T+ ++ G I
Sbjct: 41 NLNIQEQLNDNDKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRI 86
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 45.2 bits (102), Expect = 7e-06
Identities = 25/70 (35%), Positives = 40/70 (57%)
Frame = +3
Query: 81 IRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRAS 260
+RG+ + +RN +VIAH+DHGKSTL+D ++ G+I +F D K E +R
Sbjct: 50 VRGIPQNR--VRNWAVIAHIDHGKSTLSDCILKLTGVI-NEHNFRNQFLD--KLEVERRR 104
Query: 261 PLNLRPSLCS 290
+ ++ CS
Sbjct: 105 GITVKAQTCS 114
Score = 39.1 bits (87), Expect = 4e-04
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +2
Query: 353 KGFLINLIDSPGHVDFSSEVTAALRVTDGAL 445
+ +L+NLID+PGHVDF +EV +L +G +
Sbjct: 122 QSYLLNLIDTPGHVDFRAEVMHSLAACEGCI 152
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 43.6 bits (98), Expect = 2e-05
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = +2
Query: 365 INLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQA 505
INLID+PGH DF+ EV ++ V DGA+ QT+ V +QA
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAGVEAQTKVVWKQA 141
Score = 34.7 bits (76), Expect = 0.010
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +3
Query: 108 NIRNMSVIAHVDHGKSTLTDSLVSKAG 188
+IRN+ +IAH+D GK+TLT+ ++ G
Sbjct: 27 SIRNVGIIAHIDAGKTTLTEKMLYYGG 53
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 40.3 bits (90), Expect = 2e-04
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +2
Query: 353 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAI 508
K F ID+PGHVDF EV A + ++DG + T +++ AI
Sbjct: 207 KTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVVDVIEGVMINTTRIIKHAI 258
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.017
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 93 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 188
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.017
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 93 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 188
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.017
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 93 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 188
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 30.3 bits (65), Expect = 0.21
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 99 KKRNIRNMSVIAHVDHGKSTLTDSL 173
KK ++ N+ I HVDHGK+TLT ++
Sbjct: 50 KKPHV-NIGTIGHVDHGKTTLTAAI 73
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 27.9 bits (59), Expect = 1.1
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +3
Query: 234 RKDEQDRASPLNLRPSLCSSSLKRKI-*YSSQTLTSVKR 347
+KD R+SPLN + + S +K+K+ ++S T TS+++
Sbjct: 424 QKDSMRRSSPLNEKVTASSERMKKKLALFASSTDTSMQK 462
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.9 bits (59), Expect = 1.1
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -3
Query: 495 STVSVCTHTPDTQSTT-TRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVM 319
+T S + +P + STT T +PS + S++ +S S+ S S S S
Sbjct: 135 TTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 194
Query: 318 NTKSFSSSSKNIEMAV 271
++ S SSSS + + +
Sbjct: 195 SSSSSSSSSSSSSVPI 210
Score = 27.1 bits (57), Expect = 1.9
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = -3
Query: 498 RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVM 319
++TVS + + T S+++ +PS + + TS S+ S S S S
Sbjct: 124 QTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSS 183
Query: 318 NTKSFSSSSKN 286
++ S SSSS +
Sbjct: 184 SSSSSSSSSSS 194
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 120 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 221
++++ HVDHGK+TL D+ K+ I + G T+
Sbjct: 174 VTLMGHVDHGKTTLLDAF-RKSTIASTEHGGITQ 206
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 26.6 bits (56), Expect = 2.6
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 11/114 (9%)
Frame = +3
Query: 51 SKMVN-FTVDEIRGMMDKKRNIRNMSVIAH--VDHGKSTLTDSLVSKAG----IIAGARA 209
SKM N + I+ K RN +A V K+ D+ +S + + G A
Sbjct: 92 SKMRNTVNLQHIQAANQKTRNAEGERKVAQRRVQSDKAEANDAAMSSSAPTVDVSEGNSA 151
Query: 210 GETRFT----DTRKDEQDRASPLNLRPSLCSSSLKRKI*YSSQTLTSVKRVRKV 359
E + T DT + D +N+ + S K + + T S KRV KV
Sbjct: 152 AEPKITPDDSDTPRLNVDMNDKINVDEAAAKSDSKLNVDQINSTTESEKRVEKV 205
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 3.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 117 NMSVIAHVDHGKSTLTDSLVSKAGII 194
N+ I HVD GKSTL +++ G++
Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMV 265
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.8 bits (54), Expect = 4.5
Identities = 16/82 (19%), Positives = 39/82 (47%)
Frame = +3
Query: 111 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRASPLNLRPSLCS 290
+++ I+H++ KS+ + V+ I + + G F+D + ++ PS S
Sbjct: 112 VKSPKAISHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDATSANNPFSLSTDVNPSKPS 171
Query: 291 SSLKRKI*YSSQTLTSVKRVRK 356
S++ K ++++ S+ +K
Sbjct: 172 SNVFSKPSFAAKAQQSITDQQK 193
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 5.9
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = -3
Query: 465 DTQSTTTRAPSV---TRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSSS 295
+ ST ++ PS+ T+S++ +S ST +S +S +NT + +
Sbjct: 124 ENHSTNSKPPSLPPRTKSSSQSSPMASTSTSKSRYADSLSTLHDMGFSDDSVNTHALEET 183
Query: 294 SKNIEMAVDLMVMHGLVRP 238
+ ++ A++ +V HG +P
Sbjct: 184 NGDVTRAIEKIVQHGSSKP 202
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 5.9
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = -3
Query: 495 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 316
S+ S T TP + STT+ + S + S ++S S+ + + S S S +
Sbjct: 140 SSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSS-SASSSGSISSAD 198
Query: 315 TKSFSSSSKN 286
K+ S+SS +
Sbjct: 199 AKTVSASSNS 208
>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
endonuclease Cce1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 258
Score = 25.4 bits (53), Expect = 5.9
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 357 PFSLFSRWSGFVMNTK-SFSSSSKNIEMAVDLM 262
P S +S W+ V+NTK SFS ++M +L+
Sbjct: 168 PKSTYSYWAS-VLNTKASFSKKKSRVQMVKELI 199
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 5.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 113 DIPLLVHHPTDLVYREIHHFRWFMIFVLLNQL 18
D P + +H D ++E H RW + +LLN++
Sbjct: 318 DNPHIHYHYFDF-HKECSHMRWDRVSLLLNEI 348
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 108 SASCPSSHGSRLP*NSPF*MVYDFCSIK 25
+ASCP SH L + PF + + C IK
Sbjct: 417 TASCPLSHSKLLLEHRPFQTLAEACIIK 444
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 5.9
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 142 ITASQPSRTRWFPR-PVSLLVREPERPVSLTRVRTNK 249
+T S T + P P S + REP P+S R+R+++
Sbjct: 48 LTPEPSSNTFYAPSSPASAVRREPLSPMSFVRMRSHR 84
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 7.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 117 NMSVIAHVDHGKSTLTDSL 173
N+ I HV HGKST+ ++
Sbjct: 25 NIGTIGHVAHGKSTVVKAI 43
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.0 bits (52), Expect = 7.8
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 36 KNHKPSKMVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII 194
K P+ +V+ V EI + K + ++ V HVD GKST+ ++ + G I
Sbjct: 155 KKQNPTDLVS--VPEIFEQSNPKPVV-HLVVTGHVDSGKSTMLGRIMFELGEI 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,354,652
Number of Sequences: 5004
Number of extensions: 46412
Number of successful extensions: 179
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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