Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060389.seq
         (569 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   124   4e-29
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               43   2e-04
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.041
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     33   0.16 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                33   0.22 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               31   0.50 
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_54127| Best HMM Match : Keratin_B2 (HMM E-Value=2.8)                29   3.5  
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)                  29   3.5  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_50728| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)              27   8.2  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  124 bits (300), Expect = 4e-29
 Identities = 59/65 (90%), Positives = 62/65 (95%)
 Frame = +3

Query: 60  VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 239
           VNFT D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+AGETRFTDTRK
Sbjct: 1   VNFTTDQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRK 60

Query: 240 DEQDR 254
           DEQDR
Sbjct: 61  DEQDR 65



 Score =  113 bits (273), Expect = 7e-26
 Identities = 58/85 (68%), Positives = 65/85 (76%)
 Frame = +2

Query: 254 CITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVT 433
           CITIKSTAIS+++EL E D  +IT P  ++  E+GFLINLIDSPGHVDFSSEVTAALRVT
Sbjct: 66  CITIKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDFSSEVTAALRVT 123

Query: 434 DGALXXXXXXXXXXXQTETVLRQAI 508
           DGAL           QTETVLRQAI
Sbjct: 124 DGALVVVDCVSGVCVQTETVLRQAI 148



 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 22/37 (59%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +1

Query: 460 CVWCVCTNRNSTA-SGYSERIKPILFMNKMDRALLEL 567
           CV  VC    +      +ERIKP+LFMNKMDRALLEL
Sbjct: 132 CVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLEL 168


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 17/29 (58%), Positives = 22/29 (75%)
 Frame = +3

Query: 111  IRNMSVIAHVDHGKSTLTDSLVSKAGIIA 197
            +RN S++AHVDHGKSTL D L+   G I+
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTIS 1969


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 20/85 (23%), Positives = 40/85 (47%)
 Frame = +3

Query: 57  MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 236
           + N+ ++ +  +MD    IRN+++  H+  GK+   D L  +      A+ G+    +T 
Sbjct: 112 LTNYNIEYLADLMDNPELIRNVALAGHLHSGKTAFLDCLFEQTHPELEAKEGKEVMLNTE 171

Query: 237 KDEQDRASPLNLRPSLCSSSLKRKI 311
           +     A   NL  ++C + + R I
Sbjct: 172 R-LLKHAVQENLAITICINKIDRLI 195


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = +2

Query: 263 IKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 442
           IK  A S F E+E +  + +        + +   IN++D+PGH DF+ +    L   D  
Sbjct: 48  IKKGATSDFMEIERQRGISVAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSV 106

Query: 443 LXXXXXXXXXXXQTETVL 496
           +           QTE ++
Sbjct: 107 IVVIDVAKGVEEQTEKLV 124



 Score = 30.7 bits (66), Expect = 0.88
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 96  DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA 209
           D+ +  R   +I+H D GK+TLT+ L+   G I  A A
Sbjct: 5   DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGA 42


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 120 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 221
           ++++ HVDHGK+TL D+L   + + AG   G T+
Sbjct: 31  VTIMGHVDHGKTTLLDAL-RNSSVAAGEAGGITQ 63



 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = +2

Query: 344 KSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAI 508
           K   G  I  ID+PGH  F+S       VTD  +           QT   +R A+
Sbjct: 71  KLPSGEKITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHAM 125


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 93  MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 188
           M K++   N+ VI HVD GKST T  L+ K G
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 120 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 221
           ++V+ HVDHGK++L D  +  A +I G   G T+
Sbjct: 94  VTVMGHVDHGKTSLLD-YIRNANVIEGESGGITQ 126


>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1864

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = -3

Query: 477 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKL---IKKPFSLFSRWSGFVMNTKS 307
           TH+P +  TTT AP+         E    C G+ ++L     K  +L  R+ G       
Sbjct: 612 THSPSSTPTTTGAPTTAGFNEFNLEASEDCTGDYVELRDGDSKSAALIGRYCGTNAPMML 671

Query: 306 FSSSSK 289
             SS K
Sbjct: 672 MGSSDK 677


>SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 150 KSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRASPLNL-RPSLCSSSLKR 305
           K+ + D+LV   GI+   R G   +TD    + +RA+     R SL +++LKR
Sbjct: 182 KTLIKDNLVGPKGIVVDPRTGLMFWTDKETPKIERATLAGRDRISLVTTALKR 234


>SB_54127| Best HMM Match : Keratin_B2 (HMM E-Value=2.8)
          Length = 289

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 22/73 (30%), Positives = 32/73 (43%)
 Frame = -3

Query: 513 LGIA*RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRW 334
           LGI      S C  + DT  + T +        + +E ++T P E I L+  P     R 
Sbjct: 93  LGIPVSPNDSTCRQSTDTSISITTSSQAQDDITIVAEVQATQP-EVIDLVSTP--TIRRG 149

Query: 333 SGFVMNTKSFSSS 295
           S FV++  S  SS
Sbjct: 150 SSFVVDLTSEPSS 162


>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1805

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
 Frame = +3

Query: 36  KNHK-PSKMVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAG 212
           K H+ P  +   T    R M+  + N +++        GK+  T  ++     +AG   G
Sbjct: 139 KRHEVPPHIYAITDTAYRSMLQDREN-QSILCTGESGAGKTENTKKVIQYLAAVAGHSYG 197

Query: 213 ETRFTDTRKDEQDRASPLNLRPSLCSSSLKRKI 311
           +   T  + ++  ++ P ++  + C   L R +
Sbjct: 198 KVHATPQKTEKGGKSKPTSMTQTKCVGDLLRHV 230


>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
          Length = 300

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 438 PSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 316
           P   R A        TCPGE ++L+ +     +RWS  V+N
Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 495  STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKP 355
            ST+     T +  STTT A      ++ TS  +     E+ + IKKP
Sbjct: 2817 STIGTSRPTSEAFSTTTAATGTIPDSSATSATEGLSDAETEEFIKKP 2863


>SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -3

Query: 477 THTPDTQSTTTRAPSVTRSAAVTSEEKST 391
           T TP+TQSTTT  P  T+S   T E +ST
Sbjct: 346 TETPETQSTTT-TPE-TQSTTTTPETQST 372



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -3

Query: 477 THTPDTQSTTTRAPSVTRSAAVTSEEKST 391
           T TP+TQSTTT  P  T+S   T E +ST
Sbjct: 391 TETPETQSTTT-TPE-TQSTTGTPETQST 417


>SB_50728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 439 SPCGC*LCVWCVCTNR 486
           SPC    C+WC C+ R
Sbjct: 18  SPCALYFCIWCECSKR 33


>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 231 TRKDEQDRASPLNLRPSLCSSSLKRKI*YSSQTLTSVKRVRK 356
           TRK +     P ++R S   S +++ I  S  TL + K +RK
Sbjct: 11  TRKSKTHSQIPKHIRKSKTHSQIQKHIRKSKNTLANPKHIRK 52


>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
          Length = 563

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 401 SSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQA 505
           + +V+ A+R+ DGAL           QT  VLRQA
Sbjct: 21  AGKVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQA 55



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 407 EVTAALRVTDGALXXXXXXXXXXXQTETVLRQA 505
           +V+ A+R+ DGAL           QT  VLRQA
Sbjct: 93  QVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQA 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,305,499
Number of Sequences: 59808
Number of extensions: 373667
Number of successful extensions: 1306
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)