Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060389.seq
(569 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 128 2e-30
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 128 2e-30
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 60 1e-09
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 60 1e-09
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 52 3e-07
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 52 3e-07
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 49 2e-06
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 49 3e-06
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 48 5e-06
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 37 0.012
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 37 0.012
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 37 0.012
AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical... 35 0.047
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 34 0.083
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 34 0.083
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 33 0.19
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 33 0.19
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 33 0.19
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 33 0.19
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 33 0.19
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 31 0.44
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 31 0.58
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 31 0.77
U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical pr... 31 0.77
U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical pr... 31 0.77
Z68303-8|CAA92640.2| 273|Caenorhabditis elegans Hypothetical pr... 30 1.3
AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical ... 30 1.3
AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical ... 30 1.3
Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical pr... 29 2.4
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 2.4
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 2.4
Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical p... 29 3.1
Z69792-3|CAA93666.1| 284|Caenorhabditis elegans Hypothetical pr... 29 3.1
U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr... 29 3.1
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical pr... 28 4.1
AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical ... 28 4.1
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr... 28 5.4
AF040652-7|AAB95017.1| 210|Caenorhabditis elegans Hypothetical ... 28 5.4
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z73098-3|CAD44144.1| 501|Caenorhabditis elegans Hypothetical pr... 27 7.2
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 27 7.2
AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical ... 27 7.2
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z49889-1|CAA90066.2| 591|Caenorhabditis elegans Hypothetical pr... 27 9.5
AL117195-28|CAB55014.1| 458|Caenorhabditis elegans Hypothetical... 27 9.5
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 128 bits (310), Expect = 2e-30
Identities = 60/66 (90%), Positives = 65/66 (98%)
Frame = +3
Query: 57 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 236
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 237 KDEQDR 254
KDEQ+R
Sbjct: 61 KDEQER 66
Score = 112 bits (270), Expect = 1e-25
Identities = 64/93 (68%), Positives = 68/93 (73%), Gaps = 8/93 (8%)
Frame = +2
Query: 254 CITIKSTAISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGHVDFSSE 409
CITIKSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGHVDFSSE
Sbjct: 67 CITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSE 126
Query: 410 VTAALRVTDGALXXXXXXXXXXXQTETVLRQAI 508
VTAALRVTDGAL QTETVLRQAI
Sbjct: 127 VTAALRVTDGALVVVDCVSGVCVQTETVLRQAI 159
Score = 44.4 bits (100), Expect = 6e-05
Identities = 22/37 (59%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +1
Query: 460 CVWCVCTNRNSTA-SGYSERIKPILFMNKMDRALLEL 567
CV VC + +ERIKP+LFMNKMDRALLEL
Sbjct: 143 CVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLEL 179
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 128 bits (310), Expect = 2e-30
Identities = 60/66 (90%), Positives = 65/66 (98%)
Frame = +3
Query: 57 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 236
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 237 KDEQDR 254
KDEQ+R
Sbjct: 61 KDEQER 66
Score = 109 bits (263), Expect = 1e-24
Identities = 63/93 (67%), Positives = 67/93 (72%), Gaps = 8/93 (8%)
Frame = +2
Query: 254 CITIKSTAISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGHVDFSSE 409
CITIKSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGHVDFSSE
Sbjct: 67 CITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSE 126
Query: 410 VTAALRVTDGALXXXXXXXXXXXQTETVLRQAI 508
VTAAL VTDGAL QTETVLRQAI
Sbjct: 127 VTAALGVTDGALVVVDCVSGVCVQTETVLRQAI 159
Score = 44.4 bits (100), Expect = 6e-05
Identities = 22/37 (59%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +1
Query: 460 CVWCVCTNRNSTA-SGYSERIKPILFMNKMDRALLEL 567
CV VC + +ERIKP+LFMNKMDRALLEL
Sbjct: 143 CVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLEL 179
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 59.7 bits (138), Expect = 1e-09
Identities = 25/49 (51%), Positives = 37/49 (75%)
Frame = +3
Query: 108 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 254
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTR 67
Score = 55.6 bits (128), Expect = 2e-08
Identities = 28/55 (50%), Positives = 36/55 (65%)
Frame = +2
Query: 362 LINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIPSASSL 526
LINLIDSPGHVDFS EVT+AL ++D AL QTE ++RQ I + ++
Sbjct: 84 LINLIDSPGHVDFSGEVTSALILSDIALLLIDVIEGICSQTEALIRQVIRNGQAM 138
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 59.7 bits (138), Expect = 1e-09
Identities = 25/49 (51%), Positives = 37/49 (75%)
Frame = +3
Query: 108 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 254
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTR 67
Score = 55.6 bits (128), Expect = 2e-08
Identities = 28/55 (50%), Positives = 36/55 (65%)
Frame = +2
Query: 362 LINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIPSASSL 526
LINLIDSPGHVDFS EVT+AL ++D AL QTE ++RQ I + ++
Sbjct: 84 LINLIDSPGHVDFSGEVTSALILSDIALLLIDVIEGICSQTEALIRQVIRNGQAM 138
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 52.0 bits (119), Expect = 3e-07
Identities = 27/65 (41%), Positives = 37/65 (56%)
Frame = +2
Query: 314 VFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETV 493
V I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG + TE
Sbjct: 189 VSIVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEGVMMNTERA 245
Query: 494 LRQAI 508
+R AI
Sbjct: 246 IRHAI 250
Score = 35.9 bits (79), Expect = 0.020
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 90 MMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKA-GIIAGARAGETRFTDTRKDEQDRASPL 266
+MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +
Sbjct: 125 LMDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSI 184
Query: 267 NLRP 278
+P
Sbjct: 185 KSQP 188
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 52.0 bits (119), Expect = 3e-07
Identities = 27/65 (41%), Positives = 37/65 (56%)
Frame = +2
Query: 314 VFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETV 493
V I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG + TE
Sbjct: 64 VSIVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEGVMMNTERA 120
Query: 494 LRQAI 508
+R AI
Sbjct: 121 IRHAI 125
Score = 35.1 bits (77), Expect = 0.036
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 93 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKA-GIIAGARAGETRFTDTRKDEQDRASPLN 269
MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +
Sbjct: 1 MDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIK 60
Query: 270 LRP 278
+P
Sbjct: 61 SQP 63
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/49 (53%), Positives = 30/49 (61%)
Frame = +2
Query: 356 GFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQ 502
G IN+ID+PGHVDF+ EV ALRV DGA+ QT TV RQ
Sbjct: 111 GTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGGVQSQTFTVNRQ 159
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +3
Query: 111 IRNMSVIAHVDHGKSTLTDSLVSKAGII 194
IRN+ + AH+D GK+T+T+ ++ AG I
Sbjct: 44 IRNIGISAHIDSGKTTVTERILYYAGRI 71
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +2
Query: 353 KGFLINLIDSPGHVDFSSEVTAALRVTDGAL 445
+G+L+NLID+PGHVDFS+EV+ +L V DG L
Sbjct: 100 RGYLLNLIDTPGHVDFSAEVSRSLAVCDGIL 130
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = +3
Query: 111 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 254
IRN ++AHVDHGKSTL D L+ G + G+ + D + E++R
Sbjct: 42 IRNFGIVAHVDHGKSTLADRLLEMCGAVP---PGQKQMLDKLQVERER 86
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 48.0 bits (109), Expect = 5e-06
Identities = 25/51 (49%), Positives = 29/51 (56%)
Frame = +2
Query: 353 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQA 505
KG INLID+PGHVDF EV +RV DG + QT TV RQ+
Sbjct: 88 KGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAGVQPQTLTVWRQS 138
Score = 36.3 bits (80), Expect = 0.015
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +3
Query: 111 IRNMSVIAHVDHGKSTLTDSLVSKAGII 194
+RN+ VIAHVD GK+T+T+ L+ AG I
Sbjct: 25 LRNIGVIAHVDAGKTTVTERLLYLAGAI 52
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 36.7 bits (81), Expect = 0.012
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 117 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRASPLN 269
N+ I HVDHGK+TLT ++ GA+ + D +E+ R +N
Sbjct: 51 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITIN 101
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 36.7 bits (81), Expect = 0.012
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 117 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRASPLN 269
N+ I HVDHGK+TLT ++ GA+ + D +E+ R +N
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITIN 102
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 36.7 bits (81), Expect = 0.012
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 117 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRASPLN 269
N+ I HVDHGK+TLT ++ GA+ + D +E+ R +N
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITIN 102
>AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical
protein Y73F8A.1 protein.
Length = 716
Score = 34.7 bits (76), Expect = 0.047
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Frame = +3
Query: 42 HKPSKMVNFTVDEIRGMMDKKRN-IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGET 218
H P K+ DE+ M ++KRN + N A+++ + +S+ S I G A
Sbjct: 610 HVPEKVAEDIADEVARMTEQKRNYMENHRDYANLNRRVDQMQESVFSIVDRIEGVNATLQ 669
Query: 219 RFTDTRKDEQDRASPLNLRPSLCSSSLKRKI*YSSQTLTSV 341
R +QD + ++L L + R+ T+TS+
Sbjct: 670 TIEKQRVQQQDGGNLMDLSALLTNQVRNRESAARRPTITSI 710
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 33.9 bits (74), Expect = 0.083
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +3
Query: 117 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRASPLNLRPSLCSSS 296
N+ I H+DHGK+TLT ++ A+ + D K+E+ R +N+ S
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGYESP 106
Query: 297 LKR 305
L+R
Sbjct: 107 LRR 109
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 33.9 bits (74), Expect = 0.083
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +3
Query: 117 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRASPLNLRPSLCSSS 296
N+ I H+DHGK+TLT ++ A+ + D K+E+ R +N+ S
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGYESP 106
Query: 297 LKR 305
L+R
Sbjct: 107 LRR 109
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 93 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 188
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 93 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 188
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 93 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 188
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 93 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 188
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 93 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 188
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 31.5 bits (68), Expect = 0.44
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 96 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 221
D +R ++++ HVDHGK+TL D++ + I AG G T+
Sbjct: 151 DLERRPPIVTIMGHVDHGKTTLLDAM-RNSQIAAGEFGGITQ 191
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 31.1 bits (67), Expect = 0.58
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = -3
Query: 495 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 316
++ + T +T STT+ P +T + + +E T S+ P L RW V
Sbjct: 697 ASTGIITTDEETTSTTSTTPEITSTKEIVTESAITQTSVSVVESSTPRQLPERWKAIVNK 756
Query: 315 TK 310
K
Sbjct: 757 FK 758
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 30.7 bits (66), Expect = 0.77
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 495 STVSVCTHTPDTQSTTTRAPSVTRS-AAVTSEEKSTCPGESIKLIKKP 355
+T + T T T +TTT P+ T + A TSE +T P + + KP
Sbjct: 222 TTPTTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKP 269
>U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical
protein F32E10.3 protein.
Length = 876
Score = 30.7 bits (66), Expect = 0.77
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3
Query: 495 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKK 358
+T + T + +TTT APS T + VT K P E KL+KK
Sbjct: 764 TTAAPSTKPAEETTTTTEAPSTT-TKPVTVAVKKVSPEEMEKLVKK 808
>U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical
protein C56E6.5 protein.
Length = 595
Score = 30.7 bits (66), Expect = 0.77
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +3
Query: 123 SVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRASPLNLRPSLCSSSLK 302
+++ D GK+TL ++L S AG G A +F TR+ S +N R SS
Sbjct: 51 AIVGVADSGKTTLLEALTSGAGGDIGGIAMLDKFMLTRRRFNKFCSHINYRNQYPSSLSV 110
Query: 303 RKI*Y 317
R + Y
Sbjct: 111 RSLLY 115
>Z68303-8|CAA92640.2| 273|Caenorhabditis elegans Hypothetical
protein ZK809.7 protein.
Length = 273
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 445 CGC*LCVWCVCTNRNSTASGYSERIKPILFMNK 543
CG C C+ T+RN T SE +P+ F+ K
Sbjct: 232 CGHVACYTCIATSRNMTCPLCSENAEPMEFLAK 264
>AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical
protein C47F8.8 protein.
Length = 347
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 472 HTRHTVNNHKGSISDTECSCYFRREINV 389
H T H G IS T C+ +FRR I +
Sbjct: 15 HNTETTRRHFGIISCTACAAFFRRSIGM 42
>AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical
protein F43E2.3 protein.
Length = 631
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 465 DTQSTTTRAPSVTRSAAVTSEEKSTCPGESIK 370
D+ +T R+P TRS ++TS + C G+ I+
Sbjct: 174 DSANTILRSPYSTRSDSITSVDSGQCSGDQIE 205
>Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical
protein F23H12.5 protein.
Length = 802
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 495 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCP 385
ST + T T T +TTT AP+ T + T+E P
Sbjct: 210 STSTTTTTTTSTTTTTTEAPTTTTTIKTTTESIEPIP 246
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 144 DRRGRSQTCCGYSASCPSSHG 82
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
C.elegans RNA polymeraseII largest subunit (ama-1 IV)
gene, complete cds. ).
Length = 1859
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 144 DRRGRSQTCCGYSASCPSSHG 82
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 59 GEFHGRRDPWDDGQEAEYPQHVCDR 133
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 59 GEFHGRRDPWDDGQEAEYPQHVCDR 133
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>Z69792-3|CAA93666.1| 284|Caenorhabditis elegans Hypothetical
protein F40E10.5 protein.
Length = 284
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = -3
Query: 477 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESI---KLIKKPFSLF 343
T T T +TTT AP++ + + T+E+ +T +I + +K FS F
Sbjct: 218 TTTTTTTTTTTEAPTMPEAVSSTTEQSTTTTAAAIIAEETKEKEFSAF 265
>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical protein
R08E3.1b protein.
Length = 1465
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -3
Query: 495 STVSVCTHTPDTQSTTTRAPSVTRSAAVTS 406
STVSV T T ST+T APS ++S V++
Sbjct: 1044 STVSVITSTTMLPSTSTVAPSTSQSTIVST 1073
>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical protein
R08E3.1a protein.
Length = 1512
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -3
Query: 495 STVSVCTHTPDTQSTTTRAPSVTRSAAVTS 406
STVSV T T ST+T APS ++S V++
Sbjct: 1044 STVSVITSTTMLPSTSTVAPSTSQSTIVST 1073
>Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical
protein ZK265.7 protein.
Length = 370
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 498 RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 391
++T + T T T +TTT P+ + A + +KST
Sbjct: 163 KTTTTTTTSTTSTSTTTTEKPTTATTTARVTPKKST 198
>AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical
protein Y102A5C.15 protein.
Length = 338
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3
Query: 378 SIKLIKKPFSLFSRWSGFVMNTKSFSSSSKNIEMAVDLMVMHGL 247
S+ L+ PF L +R +G+ + FSS S + MAV ++ + +
Sbjct: 68 SVTLLGIPFILATRLAGYSLGLLKFSSYSFLVTMAVSVLSLQSV 111
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 495 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 391
+T + + T + +TTT AP+ T S VT+ E +T
Sbjct: 235 TTTTTESPTTEASTTTTEAPTTTTSEEVTTTEITT 269
>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
protein ZC84.6 protein.
Length = 1474
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/53 (33%), Positives = 19/53 (35%)
Frame = -3
Query: 159 GLTCRDRRGRSQTCCGYSASCPSSHGSRLP*NSPF*MVYDFCSIKPTTIRLVP 1
G RD G Q+C CPSSH P M Y C K L P
Sbjct: 607 GSPLRDSNGALQSCSERDGGCPSSHECYGVSLGPDMMSYRCCPTKTYICGLPP 659
>AF040652-7|AAB95017.1| 210|Caenorhabditis elegans Hypothetical
protein T05A8.6 protein.
Length = 210
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -3
Query: 495 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKP 355
+T T T T TTT+AP T + A T+ + C S ++ P
Sbjct: 74 TTPGATTVTTTTAPTTTKAPDCTTTTAPTTTKAPDCTTCSQDILTDP 120
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 117 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 251
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 117 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 251
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 27.5 bits (58), Expect = 7.2
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -3
Query: 468 PDTQSTTT-RAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSSS 295
P Q T+T P V AA ++ + E PFS SR V NT S SSS
Sbjct: 33 PQNQYTSTPHRPEVLNFAAPSATRLAMRRSEQPVTSSTPFSSSSRPMSAVFNTPSLSSS 91
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 105 RNIRNMSVIAHVDHGKSTLTDSLVSKAGII 194
+++ N+ V+ HVD GKSTL L+ ++
Sbjct: 168 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV 197
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 105 RNIRNMSVIAHVDHGKSTLTDSLVSKAGII 194
+++ N+ V+ HVD GKSTL L+ ++
Sbjct: 186 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV 215
>Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical
protein T21C9.3b protein.
Length = 565
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 487 FGLYTHTRHTVNNHKGSISDTECS 416
F L +T+ TV+ KG+ SDTEC+
Sbjct: 371 FPLCDYTQCTVDVQKGNYSDTECA 394
>Z73098-3|CAD44144.1| 501|Caenorhabditis elegans Hypothetical
protein T21C9.3a protein.
Length = 501
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 487 FGLYTHTRHTVNNHKGSISDTECS 416
F L +T+ TV+ KG+ SDTEC+
Sbjct: 371 FPLCDYTQCTVDVQKGNYSDTECA 394
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 27.5 bits (58), Expect = 7.2
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -3
Query: 468 PDTQSTTT-RAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSSS 295
P Q T+T P V AA ++ + E PFS SR V NT S SSS
Sbjct: 33 PQNQYTSTPHRPEVLNFAAPSATRLAMRRSEQPVTSSTPFSSSSRPMSAVFNTPSLSSS 91
>AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical
protein Y41C4A.5 protein.
Length = 373
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = -3
Query: 471 TPDTQSTTTRAPSVTRSAAVTSEEKSTCP-GESIKLIKKPFSLFSRWSGFVMNTKSFSSS 295
TPD ++TTT P+ T++ + +E+ + G ++ P S+ S SG N+ + ++S
Sbjct: 157 TPDPKATTTPTPTTTKAQNIIAEDPNGGQLGGGELVVTNPGSVGS-GSGNSGNSSNNNNS 215
Query: 294 SKN 286
S N
Sbjct: 216 SGN 218
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 117 NMSVIAHVDHGKSTLTDSLVSKAGII 194
NM + HVD GKST+ L+ G++
Sbjct: 111 NMVFVGHVDAGKSTIGGQLMFLTGMV 136
>Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical
protein C03E10.5 protein.
Length = 623
Score = 27.1 bits (57), Expect = 9.5
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = -3
Query: 468 PDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSSSSK 289
P TQSTTT + T + ++ S K C +K ++ F+R S K SS ++
Sbjct: 413 PSTQSTTTMKSTTTATTSM-STTKKVCAKSDLK-CANGWTSFNRTSTNPFCFKVISSYNQ 470
Query: 288 NIEMAVDLMVMHG 250
+ E + L G
Sbjct: 471 SYEQSEALCAASG 483
>Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical protein
C27A7.4 protein.
Length = 1403
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 409 FRREINVSR*VNQVDQETFLTLFTLVRVCDE 317
+R + + V VD ETF+ TL +VCDE
Sbjct: 1340 YRAITGLQKKVPNVDLETFVETSTLDKVCDE 1370
>Z49889-1|CAA90066.2| 591|Caenorhabditis elegans Hypothetical
protein T06H11.1a protein.
Length = 591
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 138 VDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRASP 263
+DH + + ++ + A G T TDT KD+QD P
Sbjct: 125 IDHVTARWEGANINSQSALLDADDGATVITDTIKDDQDDKEP 166
>AL117195-28|CAB55014.1| 458|Caenorhabditis elegans Hypothetical
protein Y57A10A.11 protein.
Length = 458
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -3
Query: 498 RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 391
++T + T T T +TTT AP+ T++ +T
Sbjct: 133 KTTTTTTTTTTTTSTTTTEAPTTTKTTTTRRPSTTT 168
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,187,345
Number of Sequences: 27780
Number of extensions: 270664
Number of successful extensions: 1158
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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