Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060389.seq
(569 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 33 0.003
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 33 0.003
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 29 0.025
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 25 0.40
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 25 0.70
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 25 0.70
EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor 1-a... 24 0.92
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 24 0.92
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 23 2.8
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 23 2.8
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 23 2.8
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 22 3.7
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 22 3.7
D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein. 22 4.9
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 22 4.9
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 4.9
AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase pro... 22 4.9
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 21 6.5
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 21 8.6
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 32.7 bits (71), Expect = 0.003
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 93 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 188
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32
Score = 24.2 bits (50), Expect = 0.92
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 359 FLINLIDSPGHVDFSSEVTAALRVTDGAL 445
+ + +ID+PGH DF + D A+
Sbjct: 85 YYVTIIDAPGHRDFIKNMITGTSQADCAV 113
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 32.7 bits (71), Expect = 0.003
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 93 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 188
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32
Score = 24.2 bits (50), Expect = 0.92
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 359 FLINLIDSPGHVDFSSEVTAALRVTDGAL 445
+ + +ID+PGH DF + D A+
Sbjct: 85 YYVTIIDAPGHRDFIKNMITGTSQADCAV 113
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 29.5 bits (63), Expect = 0.025
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +3
Query: 120 MSVIAHVDHGKSTLTDSL 173
++++ HVDHGK+TL D+L
Sbjct: 148 VTIMGHVDHGKTTLLDAL 165
Score = 24.2 bits (50), Expect = 0.92
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +2
Query: 350 EKGFLINLIDSPGHVDFSSEVTAALRVTD 436
E G + +D+PGH F S +TD
Sbjct: 190 ESGERVTFLDTPGHAAFISMRHRGAHITD 218
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 25.4 bits (53), Expect = 0.40
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 117 NMSVIAHVDHGKSTLTDSL 173
N+ I HV HGKST+ ++
Sbjct: 44 NIGTIGHVAHGKSTIVKAI 62
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 24.6 bits (51), Expect = 0.70
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 456 TVCLVCVYKPKQYCV 500
TV LVC+Y PK Y +
Sbjct: 749 TVTLVCLYSPKIYII 763
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 24.6 bits (51), Expect = 0.70
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 456 TVCLVCVYKPKQYCV 500
TV LVC+Y PK Y +
Sbjct: 839 TVTLVCLYSPKIYII 853
>EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor
1-alpha protein.
Length = 172
Score = 24.2 bits (50), Expect = 0.92
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 359 FLINLIDSPGHVDFSSEVTAALRVTDGAL 445
+ + +ID+PGH DF + D A+
Sbjct: 12 YYVTIIDAPGHRDFIKNMITGTSQADCAV 40
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 24.2 bits (50), Expect = 0.92
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 359 FLINLIDSPGHVDFSSEVTAALRVTDGAL 445
+ + +ID+PGH DF + D A+
Sbjct: 28 YYVTIIDAPGHRDFIKNMITGTSQADCAV 56
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 2.8
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +1
Query: 163 RTRWFPRPVSLLVREPERPVSLTRVRTNKTVHHH*IYGHLY 285
R W R RE R + +NKT+H++ Y + Y
Sbjct: 60 RETWKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNY 100
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 2.8
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +1
Query: 163 RTRWFPRPVSLLVREPERPVSLTRVRTNKTVHHH*IYGHLY 285
R W R RE R + +NKT+H++ Y + Y
Sbjct: 60 RETWKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNY 100
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 2.8
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +1
Query: 163 RTRWFPRPVSLLVREPERPVSLTRVRTNKTVHHH*IYGHLY 285
R W R RE R + +NKT+H++ Y + Y
Sbjct: 60 RETWKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNY 100
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 22.2 bits (45), Expect = 3.7
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = -1
Query: 98 VHHPTDLVYREIHH 57
+HHP + R++HH
Sbjct: 400 LHHPNCKINRKVHH 413
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 22.2 bits (45), Expect = 3.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -3
Query: 567 ELKKSTVHFVHEQNRLDALGIA*RSTVSVCTHTPDTQSTTTRAP 436
E +K+ + Q R+ + G+ +TVS+ T + T R+P
Sbjct: 873 EKRKTLRASIAAQRRIQSNGLNDPTTVSLAVDTVARSNVTPRSP 916
Score = 21.4 bits (43), Expect = 6.5
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +2
Query: 254 CITIKSTAISMFF 292
C T+K +A+ M+F
Sbjct: 688 CATVKGSAVDMYF 700
>D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein.
Length = 567
Score = 21.8 bits (44), Expect = 4.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 278 ISMFFELEEKDLVFITNPDQREKSEKGFLI 367
++MF+ D+ I+N +Q + S GF I
Sbjct: 527 LNMFYNNFNSDIKSISNNEQVKVSALGFFI 556
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 21.8 bits (44), Expect = 4.9
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 462 TQSTTTRAP-SVTRSAAVTSEEKSTC 388
+ STTT +P + T+S V + STC
Sbjct: 324 SSSTTTTSPMTSTKSTIVRNHLNSTC 349
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.8 bits (44), Expect = 4.9
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 192 IAGARAGETRFTDTRKDEQDRASPLNLRPSLCSSSLKRKI*YSS 323
+ G AG+ T + +D SP L P+L S+++ + YSS
Sbjct: 631 VCGVAAGDPPLTISWL--KDGQSPFPLPPNLASANISQLDPYSS 672
>AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase
protein.
Length = 567
Score = 21.8 bits (44), Expect = 4.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 278 ISMFFELEEKDLVFITNPDQREKSEKGFLI 367
++MF+ D+ I+N +Q + S GF I
Sbjct: 527 LNMFYNNFNSDIKSISNNEQVKVSALGFFI 556
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 21.4 bits (43), Expect = 6.5
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +1
Query: 163 RTRWFPRPVSLLVREPERPVSLTRVRTNKTVHHH*IYGHLY 285
R W R RE R + +N+T+H++ Y + Y
Sbjct: 60 RETWKERSRDRTERERSREPKIISSLSNRTIHNNNNYKYNY 100
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 21.0 bits (42), Expect = 8.6
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = +3
Query: 477 YKPKQYCVRLFRAHQAYSVHEQNG 548
Y P Q+ + H+ S H Q+G
Sbjct: 316 YHPHQHHPSQYHPHRGSSPHHQHG 339
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,571
Number of Sequences: 438
Number of extensions: 3406
Number of successful extensions: 24
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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