Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060388.seq
         (557 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    43   2e-06
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   3.1  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   9.5  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 42.7 bits (96), Expect = 2e-06
 Identities = 20/55 (36%), Positives = 32/55 (58%)
 Frame = +2

Query: 284 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
           EV V+G +   PI  FE +    ++ + VK  GY +PT IQ    P+ +SG++L+
Sbjct: 145 EVKVTGNDAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLM 199



 Score = 27.5 bits (58), Expect = 0.083
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +1

Query: 457 QTGSGKTLAYILPAIVH 507
           QTGSGKT A++LP I+H
Sbjct: 203 QTGSGKTAAFMLP-IIH 218


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 540 HHLSE*AVGCFVHNG 496
           HHL+  AV CF+  G
Sbjct: 367 HHLARHAVACFLTRG 381


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 110 AIIPVTRHD*FSDLVEDVYL 51
           A++PV +H     LV  VYL
Sbjct: 18  ALLPVKKHHRLEKLVPCVYL 37


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,468
Number of Sequences: 336
Number of extensions: 2370
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)