Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060388.seq
(557 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 84 1e-17
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 49 5e-07
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 47 2e-06
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 44 1e-05
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 41 1e-04
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 36 0.005
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 34 0.012
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 34 0.016
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 34 0.016
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 33 0.022
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 33 0.038
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 32 0.050
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 31 0.15
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 29 0.35
SPCC576.12c |||DUF2008 family protein|Schizosaccharomyces pombe|... 28 1.1
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 27 1.4
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 27 1.4
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 27 1.9
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 27 1.9
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.5
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 26 4.3
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 26 4.3
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po... 26 4.3
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 26 4.3
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 5.7
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 25 7.5
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 25 7.5
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 10.0
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 10.0
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 25 10.0
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 84.2 bits (199), Expect = 1e-17
Identities = 35/66 (53%), Positives = 48/66 (72%)
Frame = +2
Query: 257 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSG 436
EV EYR E+ V G+ V P+ FEEA FP+YV + VK +G++ PTPIQ Q WP+AMSG
Sbjct: 100 EVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSG 159
Query: 437 KNLVGV 454
+++VG+
Sbjct: 160 RDMVGI 165
Score = 33.5 bits (73), Expect = 0.022
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +1
Query: 460 TGSGKTLAYILPAIVH 507
TGSGKTL+Y LPAIVH
Sbjct: 168 TGSGKTLSYCLPAIVH 183
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 48.8 bits (111), Expect = 5e-07
Identities = 18/61 (29%), Positives = 39/61 (63%)
Frame = +2
Query: 272 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLVG 451
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 452 V 454
+
Sbjct: 292 I 292
Score = 27.5 bits (58), Expect = 1.4
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIV 504
+TGSGKT A+I+P I+
Sbjct: 294 ETGSGKTAAFIIPLII 309
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 47.2 bits (107), Expect = 2e-06
Identities = 20/46 (43%), Positives = 32/46 (69%)
Frame = +2
Query: 317 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLVGV 454
PI F+E + +++G+K YKEPTPIQA WP ++G+++VG+
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGI 208
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +1
Query: 457 QTGSGKTLAYILPAI 501
+TGSGKT+A+ +PA+
Sbjct: 210 ETGSGKTVAFGIPAL 224
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 44.4 bits (100), Expect = 1e-05
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +2
Query: 257 EVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMS 433
EV+E R + + + + G++ P+ + + + ++GY++PT IQAQ P S
Sbjct: 395 EVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITS 454
Query: 434 GKNLVGVLK 460
G++++GV K
Sbjct: 455 GRDVIGVAK 463
Score = 27.5 bits (58), Expect = 1.4
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIVH 507
+TGSGKT+A++LP H
Sbjct: 463 KTGSGKTIAFLLPMFRH 479
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 41.1 bits (92), Expect = 1e-04
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +2
Query: 287 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLM 210
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 35.5 bits (78), Expect = 0.005
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +2
Query: 329 FEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLVG 451
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVG 301
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 34.3 bits (75), Expect = 0.012
Identities = 12/42 (28%), Positives = 27/42 (64%)
Frame = +2
Query: 329 FEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLVGV 454
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGL 89
Score = 26.6 bits (56), Expect = 2.5
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 457 QTGSGKTLAYILPAI 501
QTGSGKT A+ LP I
Sbjct: 91 QTGSGKTAAFALPVI 105
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 33.9 bits (74), Expect = 0.016
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +2
Query: 299 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLV 55
Score = 27.1 bits (57), Expect = 1.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 436 KEFSWRTQTGSGKTLAYILPAI 501
K+ + +TGSGKT AY++P +
Sbjct: 52 KDLVAQARTGSGKTAAYLIPIL 73
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 33.9 bits (74), Expect = 0.016
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 329 FEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
F+ N +++ V G+K+ TP+QA P+ + K+LV
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLV 42
Score = 29.1 bits (62), Expect = 0.46
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +1
Query: 460 TGSGKTLAYILPAIVHKTTNR 522
TGSGKTLAY+LP K T R
Sbjct: 47 TGSGKTLAYLLPCF-DKVTRR 66
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 33.5 bits (73), Expect = 0.022
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 329 FEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLVGVLKRVPAK 475
FE+ + G+ G++ P+PIQ + PIA+SG++++ K K
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
Score = 24.6 bits (51), Expect = 10.0
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +1
Query: 451 RTQTGSGKTLAYILPAIVHKTTNR 522
R + G+GKT A+++P++ T +
Sbjct: 87 RAKNGTGKTAAFVIPSLEKVDTKK 110
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 32.7 bits (71), Expect = 0.038
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +2
Query: 263 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKN 442
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 443 LV 448
++
Sbjct: 61 VI 62
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 32.3 bits (70), Expect = 0.050
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 329 FEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLVGVLK 460
F+ + + + G+K PTPIQ + P+ + G+++VG+ +
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMAR 114
Score = 27.9 bits (59), Expect = 1.1
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIVH 507
+TGSGKT A+++P I H
Sbjct: 114 RTGSGKTAAFVIPMIEH 130
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 30.7 bits (66), Expect = 0.15
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1
Query: 457 QTGSGKTLAYILPAI 501
QTGSGKTLAY+LP +
Sbjct: 186 QTGSGKTLAYLLPIV 200
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 29.5 bits (63), Expect = 0.35
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Frame = +1
Query: 460 TGSGKTLAYILP---AIVHKTTNRLFGEVMV 543
TGSGKTL+Y++P + H+T RL V+V
Sbjct: 182 TGSGKTLSYVIPIVQCLSHRTVPRLRCVVIV 212
>SPCC576.12c |||DUF2008 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 89
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 103 IIAVETVVPNLEEATNSAIIRLDLATVAVDLEDLEDLVGKKNSLEFS 243
I + E V EE NS + + + ++LEDLE+ + + +L+FS
Sbjct: 43 IYSKEAVCRAYEEKKNSIMSSSENEDIVLELEDLENGIAAQLALDFS 89
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 27.5 bits (58), Expect = 1.4
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +1
Query: 457 QTGSGKTLAYILPAI 501
+TGSGKTLA+++P I
Sbjct: 134 KTGSGKTLAFLIPTI 148
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +1
Query: 457 QTGSGKTLAYILPAI 501
+TGSGKTLA+I+P I
Sbjct: 84 KTGSGKTLAFIVPLI 98
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 27.1 bits (57), Expect = 1.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 233 WSSQKITNEVEEYRNNHEVTVSGVEVHNPIQYFE 334
W ++ + + Y N+ + G EVHNP FE
Sbjct: 278 WEEEQAHLDRDWYMNSESQNLLGDEVHNPFSDFE 311
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 27.1 bits (57), Expect = 1.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 451 RTQTGSGKTLAYILPAIVHKTTN 519
+ TGSGKTLA+ +P + H N
Sbjct: 165 KADTGSGKTLAFGIPILEHCLRN 187
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 26.6 bits (56), Expect = 2.5
Identities = 8/17 (47%), Positives = 15/17 (88%)
Frame = +1
Query: 460 TGSGKTLAYILPAIVHK 510
TG GK+L++++PA++ K
Sbjct: 1215 TGGGKSLSFLIPALIEK 1231
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 26.6 bits (56), Expect = 2.5
Identities = 8/17 (47%), Positives = 15/17 (88%)
Frame = +1
Query: 460 TGSGKTLAYILPAIVHK 510
TG GK+L++++PA++ K
Sbjct: 1215 TGGGKSLSFLIPALIEK 1231
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 422 IAMSGKNLVGVLKRVPAKRWPTSCQPLCTKQPTAYSER*WSDCFG 556
I + G + +GV R KRW + + P Y + W +C G
Sbjct: 475 IGLLGISSIGVKGRHGKKRWHKFRELVKNGVPLCYKAKVWLECSG 519
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 25.8 bits (54), Expect = 4.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 460 TGSGKTLAYILPAI 501
TGSGKT+AY+ P +
Sbjct: 92 TGSGKTIAYLFPIL 105
>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 4.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 245 KITNEVEEYRNNHEVTVSGVEVHNPIQYFE 334
K TN++E Y NH++ + IQ FE
Sbjct: 128 KFTNKLEIYPGNHDIGFGNHAIVKDIQRFE 157
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 460 TGSGKTLAYILPAIVHKTTNR 522
TG GK+L Y LPA++ +R
Sbjct: 543 TGGGKSLCYQLPAVIEGGASR 563
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 380 PLSLHLVAHNQENL--LLQSIE 321
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 239 SQKITNEVEEYRNNHEVTVSGVEVHN 316
SQK+ +EE RN++E + +E N
Sbjct: 397 SQKLLKFIEEIRNDYEERIHALESQN 422
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.0 bits (52), Expect = 7.5
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 227 ILWSSQKITNEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 394
I+W S K ++ + N+E+ +G N I P++ Q V T GY P
Sbjct: 39 IIWRSLKNVKCIDSFHGNNEILGAGSSTGN-ISLL-SVKHPEF--QAVVTPGYARP 90
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -1
Query: 107 IIPVTR-HD*FSDLVEDVYLNYGFFLTQ 27
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 24.6 bits (51), Expect = 10.0
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 400 RRRFFVTHCLY--TLLHIIRKICFFKVLNRIMNLNATYSYLVIISV 269
RR T CLY + L +I K C + I+ +NA ++L +SV
Sbjct: 524 RRLNIHTTCLYRDSNLQVIIKSCIINSVKSIILINAGLAHLGKVSV 569
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 457 QTGSGKTLAYILPAI 501
+TGSGKT A+ LP I
Sbjct: 52 KTGSGKTAAFALPII 66
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,088,691
Number of Sequences: 5004
Number of extensions: 39241
Number of successful extensions: 128
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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