Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060388.seq
(557 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 59 3e-09
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 55 3e-08
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 50 1e-06
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 50 1e-06
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 47 1e-05
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 1e-04
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 42 3e-04
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 33 0.16
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 32 0.37
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 31 0.64
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 31 0.64
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 30 1.1
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 30 1.5
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 29 3.4
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 28 5.9
SB_42409| Best HMM Match : Pkinase (HMM E-Value=6.7e-24) 27 7.9
SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9) 27 7.9
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 58.8 bits (136), Expect = 3e-09
Identities = 26/53 (49%), Positives = 36/53 (67%)
Frame = +2
Query: 254 NEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 412
+EV+ YR + ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 60 HEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 55.2 bits (127), Expect = 3e-08
Identities = 22/62 (35%), Positives = 39/62 (62%)
Frame = +2
Query: 269 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
+R + ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + ++++
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDII 142
Query: 449 GV 454
GV
Sbjct: 143 GV 144
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Frame = +2
Query: 257 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSG 436
E+++ R + VSG P F F + + ++ + Y +PT IQ Q PIA+SG
Sbjct: 495 EIDDLRKKMGIKVSGAMPARPCISFAHFGFDEQMMASIRKLEYTQPTQIQCQALPIALSG 554
Query: 437 KNLVGVLK----RVPAKRWP 484
++++G+ K + A WP
Sbjct: 555 RDIIGIAKTGSGKTAAFLWP 574
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIVH 507
+TGSGKT A++ PA+VH
Sbjct: 562 KTGSGKTAAFLWPALVH 578
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +2
Query: 239 SQKITNEVEEYRNNHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQ 406
++K ++ +R+ + V G +V +P++ F E FPDY+ V+ GY PTPIQ
Sbjct: 131 AEKHQEKINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQ 190
Query: 407 AQXWPIAMSGKNLVG 451
Q P+ G G
Sbjct: 191 MQATPLMAHGPKKSG 205
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/78 (29%), Positives = 42/78 (53%)
Frame = +2
Query: 257 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSG 436
+V++ R+ E+ V G V +P+ F +F + + + + GY PTPIQ Q P+ +SG
Sbjct: 174 QVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPTPIQMQVLPVLLSG 233
Query: 437 KNLVGVLKRVPAKRWPTS 490
++++ K P+S
Sbjct: 234 RDVMVCASTGSGKLLPSS 251
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Frame = +2
Query: 260 VEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGK 439
V+E R + + + G + PI+ F + N P + + ++ PTPIQ Q MSG+
Sbjct: 51 VDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKNFQVPTPIQMQSLSCVMSGR 110
Query: 440 NLVGVLKRVPAKRWPTS---CQPLCTKQPT 520
+++G+ + K S C L TK P+
Sbjct: 111 DIIGLAETGSGKTLAYSLPLCMLLRTKAPS 140
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +2
Query: 257 EVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMS 433
E +E+R + E + V G P++ + + + +K Y++PTPIQAQ P+ MS
Sbjct: 82 ETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKILDVLKKNSYEKPTPIQAQAIPVIMS 141
Query: 434 GKNLVGVL 457
G++++ ++
Sbjct: 142 GRDMIAIV 149
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +2
Query: 284 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++++
Sbjct: 698 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVM 752
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +2
Query: 284 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++++
Sbjct: 121 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVM 175
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 293 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
VSG I F E F + + + GY+ PTP+Q PI M+G++L+
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLM 520
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1
Query: 457 QTGSGKTLAYILPAI 501
QTGSGKT AY+LP +
Sbjct: 524 QTGSGKTAAYMLPVL 538
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 33.1 bits (72), Expect = 0.16
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 320 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLVGVLK 460
++ F + G+ G+ PT IQ Q P+A+SG++++G K
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAK 95
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 31.9 bits (69), Expect = 0.37
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 362 QGVKTMGYKEPTPIQAQXWPIAMSGKNL 445
+ V +G+ PTPIQA P+A+ GK++
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDV 50
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 31.9 bits (69), Expect = 0.37
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 320 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
I FE+ + + + V GYK+PTP+Q PI ++L+
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLM 916
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 31.1 bits (67), Expect = 0.64
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +2
Query: 305 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXW 418
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 31.1 bits (67), Expect = 0.64
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 329 FEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLVGVLKRVPAK 475
FE+ + G+ G+ +P+PIQ + P+A++G++++ K K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 31.1 bits (67), Expect = 0.64
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 329 FEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLVGVLKRVPAK 475
FE+ + G+ G+ +P+PIQ + P+A++G++++ K K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 248 ITNEVEEYRNN--HEVTVSGVEVHNPIQYFEEANFPDY 355
I E EE NN H++ + + +HNP YFE+ + DY
Sbjct: 228 IEQEAEEEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIVHK 510
QTGSGKTLAY+ P +VH+
Sbjct: 423 QTGSGKTLAYLAP-LVHR 439
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 281 HEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMS 433
HEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ ++
Sbjct: 86 HEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLA 139
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -3
Query: 177 CQIETNYRRICCLLQIWN-HRFHGYYSS 97
C + +YRR CC L +W H + Y+SS
Sbjct: 218 CCVRVDYRRKCC-LHVWRVHTTNTYWSS 244
>SB_42409| Best HMM Match : Pkinase (HMM E-Value=6.7e-24)
Length = 465
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -3
Query: 540 HHLSE*AVGCFVHNGWQDVGQRFAGTRLSTPTKFFP 433
++ +E ++ FV+N WQ GQ+F + ST T+ P
Sbjct: 59 NNANEPSIAGFVYN-WQSAGQKFEFIKNSTNTRQLP 93
>SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)
Length = 1058
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 404 QAQXWPIAMSGKNLVGVLKRVPAKRWPTSCQPLCTKQPTAYSER 535
+A+ +P GK V KR AKR+P + + + PT E+
Sbjct: 601 RAKRYPNTKRGKAEVSYTKRGKAKRYPNTKRGKAKRSPTLNEEK 644
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIVH 507
+TGSGKTLA+ +P I H
Sbjct: 176 ETGSGKTLAFGIPIIQH 192
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,436,971
Number of Sequences: 59808
Number of extensions: 281266
Number of successful extensions: 785
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -