Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060388.seq
(557 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 65 4e-11
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 50 1e-06
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 48 3e-06
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 46 1e-05
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 45 3e-05
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 44 6e-05
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 44 7e-05
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 44 7e-05
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 44 7e-05
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 39 0.002
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 36 0.015
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 35 0.046
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 35 0.046
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 34 0.060
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 34 0.060
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 34 0.060
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 32 0.24
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 32 0.24
Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical p... 31 0.56
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 30 0.98
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 30 0.98
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 30 0.98
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 30 0.98
Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical pr... 29 2.3
AL132948-2|CAC51076.2| 496|Caenorhabditis elegans Hypothetical ... 29 2.3
AC006714-20|AAK29723.2| 281|Caenorhabditis elegans Serpentine r... 29 2.3
AC006714-16|AAK29721.3| 281|Caenorhabditis elegans Serpentine r... 29 2.3
Z77133-7|CAB00865.2| 735|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical pr... 28 4.0
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 28 4.0
AL008868-4|CAO82021.1| 735|Caenorhabditis elegans Hypothetical ... 28 4.0
Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical pr... 28 5.2
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 27 9.1
AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine r... 27 9.1
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 27 9.1
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 64.9 bits (151), Expect = 4e-11
Identities = 27/62 (43%), Positives = 41/62 (66%)
Frame = +2
Query: 269 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
+R + +++ G V P++ +EEA FPD V Q VK +GY EPTPIQ Q PI + ++++
Sbjct: 283 FREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVI 342
Query: 449 GV 454
GV
Sbjct: 343 GV 344
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIVHKTT 516
+TGSGKT A++LP +V T+
Sbjct: 346 ETGSGKTAAFLLPLLVWITS 365
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 49.6 bits (113), Expect = 1e-06
Identities = 23/74 (31%), Positives = 46/74 (62%)
Frame = +2
Query: 239 SQKITNEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXW 418
S++ E++++ + ++VT+ G V P+ F EA P + + + +++PT IQ+ W
Sbjct: 102 SRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAPLPGQIHELLYGK-FQKPTVIQSISW 160
Query: 419 PIAMSGKNLVGVLK 460
PIAMSG++++ + K
Sbjct: 161 PIAMSGRDIISIAK 174
Score = 34.7 bits (76), Expect = 0.046
Identities = 17/28 (60%), Positives = 22/28 (78%), Gaps = 2/28 (7%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIVH--KTTNRLFGE 534
+TGSGKTLA++LPA+VH K +R GE
Sbjct: 174 KTGSGKTLAFMLPALVHITKQAHRQRGE 201
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 48.4 bits (110), Expect = 3e-06
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Frame = +2
Query: 257 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSG 436
+V +N + V G++ P+ F +F + + ++ Y++PTPIQA P A+SG
Sbjct: 243 DVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSG 302
Query: 437 KNLVGVLK----RVPAKRWP 484
++++G+ K + A WP
Sbjct: 303 RDVLGIAKTGSGKTAAYLWP 322
Score = 31.9 bits (69), Expect = 0.32
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIVH 507
+TGSGKT AY+ PAIVH
Sbjct: 310 KTGSGKTAAYLWPAIVH 326
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +2
Query: 257 EVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMS 433
EV+ YR + +TV G++ PI+ + + + +K Y +PT IQAQ P MS
Sbjct: 281 EVKAYREELDSITVKGIDCPKPIKTWAQCGVNLKMMNVLKKFEYSKPTSIQAQAIPSIMS 340
Query: 434 GKNLVGVLK 460
G++++G+ K
Sbjct: 341 GRDVIGIAK 349
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIVH 507
+TGSGKTLA++LP H
Sbjct: 349 KTGSGKTLAFLLPMFRH 365
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 45.2 bits (102), Expect = 3e-05
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +2
Query: 287 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
V +G +V PI F + + +++++ +KT GY PTP+Q P G++L+
Sbjct: 154 VEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLM 207
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 44.4 bits (100), Expect = 6e-05
Identities = 19/54 (35%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Frame = +2
Query: 296 SGVEVHNPIQYFEEANFPDYVQQG-VKTMGYKEPTPIQAQXWPIAMSGKNLVGV 454
S V++ P+ FE+A + G ++ G+++P+PIQ+Q WP+ +SG++ +GV
Sbjct: 74 STVKIPPPVNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGV 127
Score = 34.7 bits (76), Expect = 0.046
Identities = 13/18 (72%), Positives = 18/18 (100%)
Frame = +1
Query: 454 TQTGSGKTLAYILPAIVH 507
+QTGSGKTLA++LPA++H
Sbjct: 128 SQTGSGKTLAFLLPALLH 145
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 44.0 bits (99), Expect = 7e-05
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +2
Query: 278 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
N V VSG V I++F EA F V + V GY +PTP+Q P ++ ++L+
Sbjct: 124 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLM 180
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIVH 507
QTGSGKT A++LP I H
Sbjct: 184 QTGSGKTAAFLLPIIQH 200
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 44.0 bits (99), Expect = 7e-05
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +2
Query: 278 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
N V VSG V I++F EA F V + V GY +PTP+Q P ++ ++L+
Sbjct: 108 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLM 164
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIVH 507
QTGSGKT A++LP I H
Sbjct: 168 QTGSGKTAAFLLPIIQH 184
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 44.0 bits (99), Expect = 7e-05
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +2
Query: 278 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
N V VSG V I++F EA F V + V GY +PTP+Q P ++ ++L+
Sbjct: 105 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLM 161
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIVH 507
QTGSGKT A++LP I H
Sbjct: 165 QTGSGKTAAFLLPIIQH 181
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +2
Query: 257 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV-KTMGYKEPTPIQAQXWPIAMS 433
+ E R ++ G + PI F E FP + + + K G PT IQ Q P+A+S
Sbjct: 167 DYEIQRKRLGISCEGDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVTPTAIQIQGIPVALS 226
Query: 434 GKNLVGV 454
G++++G+
Sbjct: 227 GRDMIGI 233
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 36.3 bits (80), Expect = 0.015
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 329 FEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNL 445
FE+ N + + GY +PTPIQ P+A++GK++
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDI 188
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 34.7 bits (76), Expect = 0.046
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 317 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
P + F +++ P +++ V+ GY TPIQ P+ GK+++
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDIL 339
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 34.7 bits (76), Expect = 0.046
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 317 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
P + F +++ P +++ V+ GY TPIQ P+ GK+++
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDIL 339
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 34.3 bits (75), Expect = 0.060
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 317 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
P + F EAN + +Q+ V GY + TPIQ P+ G +++
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIM 382
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 34.3 bits (75), Expect = 0.060
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 317 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
P + F EAN + +Q+ V GY + TPIQ P+ G +++
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIM 382
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 34.3 bits (75), Expect = 0.060
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 317 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
P + F EAN + +Q+ V GY + TPIQ P+ G +++
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIM 382
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 32.3 bits (70), Expect = 0.24
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 311 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLVGV 454
H +++ V + ++ G+ +PTPIQ + P M GK++V +
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAM 67
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 32.3 bits (70), Expect = 0.24
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 311 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLVGV 454
H +++ V + ++ G+ +PTPIQ + P M GK++V +
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAM 67
>Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical
protein F08A8.8 protein.
Length = 222
Score = 31.1 bits (67), Expect = 0.56
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +1
Query: 112 VETVVPNLEEATNSAIIRLDLATVAVDLEDLEDLVGKKN 228
+ETV+ LE N +RL+ A VA E LE + GK N
Sbjct: 71 IETVILALEAGMNLEDVRLEFAHVATREEILESVFGKLN 109
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 30.3 bits (65), Expect = 0.98
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 329 FEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
F EAN + +++ V GY + TPIQ P+ G +++
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIM 593
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 30.3 bits (65), Expect = 0.98
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 329 FEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
F EAN + +++ V GY + TPIQ P+ G +++
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIM 593
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 30.3 bits (65), Expect = 0.98
Identities = 14/20 (70%), Positives = 18/20 (90%), Gaps = 2/20 (10%)
Frame = +1
Query: 457 QTGSGKTLAYILPAI--VHK 510
+TGSGKTLA++LPAI +HK
Sbjct: 113 KTGSGKTLAFLLPAIELLHK 132
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 30.3 bits (65), Expect = 0.98
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 329 FEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
F EAN + +++ V GY + TPIQ P+ G +++
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIM 593
>Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical
protein E03A3.2 protein.
Length = 809
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 460 TGSGKTLAYILPAIVH 507
TG+GK+L Y LPA+VH
Sbjct: 203 TGAGKSLCYQLPAVVH 218
>AL132948-2|CAC51076.2| 496|Caenorhabditis elegans Hypothetical
protein Y39B6A.2 protein.
Length = 496
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 251 TNEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQ 364
TN +E +HEV G E+H+ Q F + P+Y Q
Sbjct: 416 TNGIEYVVRSHEVKPEGYEMHHNGQCFTVFSAPNYCDQ 453
>AC006714-20|AAK29723.2| 281|Caenorhabditis elegans Serpentine
receptor, class z protein9 protein.
Length = 281
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/61 (22%), Positives = 32/61 (52%)
Frame = -2
Query: 442 ILSRHSYRPALSLNRRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVIISVLF 263
++ R +YR N + + + Y + +I + F + + ++NLN T +L I+++F
Sbjct: 26 LVYRKAYRFNSERNTATYPIVNSFYKKVALINALYFIESILIVVNLNVTNEWLNKIAIIF 85
Query: 262 D 260
+
Sbjct: 86 N 86
>AC006714-16|AAK29721.3| 281|Caenorhabditis elegans Serpentine
receptor, class z protein8 protein.
Length = 281
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/61 (22%), Positives = 32/61 (52%)
Frame = -2
Query: 442 ILSRHSYRPALSLNRRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVIISVLF 263
++ R +YR N + + + Y + +I + F + + ++NLN T +L I+++F
Sbjct: 26 LVYRKAYRFNSERNTATYPIVNSFYKKVALINALYFIESILIVVNLNVTNEWLNKIAIIF 85
Query: 262 D 260
+
Sbjct: 86 N 86
>Z77133-7|CAB00865.2| 735|Caenorhabditis elegans Hypothetical
protein K03A11.1 protein.
Length = 735
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 254 NEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD-YVQQGVKTMG 382
N+ EY N SG E+ PI+ F + F + YV+ + G
Sbjct: 74 NDANEYSQNGNHDFSGAEMSYPIEDFAQNTFAEQYVEDSYQNAG 117
>Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical
protein T20D3.5b protein.
Length = 312
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 164 RIIAEFVASSKFGTTVSTAIIPV 96
++I +FVA S G T+STA P+
Sbjct: 221 QLIGDFVAGSLLGATISTAFFPL 243
>Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical
protein T20D3.5a protein.
Length = 221
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 164 RIIAEFVASSKFGTTVSTAIIPV 96
++I +FVA S G T+STA P+
Sbjct: 130 QLIGDFVAGSLLGATISTAFFPL 152
>Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.1 protein.
Length = 399
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = +2
Query: 233 WSSQKITNEVE--EYRNNHEVTVSGVEV---HNPIQYFEEANFPDYVQQGVKTMG 382
W +TN V+ Y + +V ++ E+ NP+ YF FP +V V +G
Sbjct: 225 WELINLTNRVDFLTYNDRFDVELAVYEIKIARNPLYYFYMIVFPSFVINSVSIVG 279
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 347 PDYVQQGVKTMGYKEPTPIQAQXWPIAM 430
P+ V + ++ MG+ EPT IQ+ P A+
Sbjct: 163 PNEVLEAIEQMGFSEPTEIQSAVLPAAV 190
>AL008868-4|CAO82021.1| 735|Caenorhabditis elegans Hypothetical
protein K03A11.1 protein.
Length = 735
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 254 NEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD-YVQQGVKTMG 382
N+ EY N SG E+ PI+ F + F + YV+ + G
Sbjct: 74 NDANEYSQNGNHDFSGAEMSYPIEDFAQNTFAEQYVEDSYQNAG 117
>Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.6 protein.
Length = 401
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Frame = +2
Query: 233 WSSQKITNEVEEYR-----NNHEVTVSGVEVH-NPIQYFEEANFPDYVQQGVKTMG 382
W +TN VE+ + N ++ V + + NP+ Y FP +V G+ +G
Sbjct: 226 WKVVSLTNRVEQLKYDDDYGNMDLAVFEITIRRNPLYYIYMIVFPSFVINGISIVG 281
>Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.5 protein.
Length = 401
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Frame = +2
Query: 233 WSSQKITNEVEEYR-----NNHEVTVSGVEVH-NPIQYFEEANFPDYVQQGVKTMG 382
W +TN VE+ + N ++ V + + NP+ Y FP +V G+ +G
Sbjct: 226 WKVVSLTNRVEQLKYDDDYGNMDLAVFEITIRRNPLYYIYMIVFPSFVINGISIVG 281
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +1
Query: 460 TGSGKTLAYILPAIV 504
TGSGKTLA+++P ++
Sbjct: 782 TGSGKTLAFLIPFVI 796
>AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 12 protein.
Length = 341
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = -3
Query: 222 FSHQILQILQIYCHRCQIETN-YR-RICCL 139
+S I QI+ +CH+ +++TN +R RI CL
Sbjct: 274 YSFAIPQIMTCFCHKWKVQTNTFRIRIGCL 303
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +1
Query: 460 TGSGKTLAYILPAIV 504
TGSGKTLA+++P ++
Sbjct: 782 TGSGKTLAFLIPFVI 796
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,535,314
Number of Sequences: 27780
Number of extensions: 217799
Number of successful extensions: 714
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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