Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060388.seq
         (557 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       57   1e-10
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   3.7  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   4.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 56.8 bits (131), Expect = 1e-10
 Identities = 29/77 (37%), Positives = 45/77 (58%)
 Frame = +2

Query: 218 EKRILWSSQKITNEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 397
           EK +  +  +I    ++Y +N +V VSG  V  PI+ FE A   + V   +K  GYK+PT
Sbjct: 162 EKSLFENGVEIGINFDKY-DNIQVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPT 220

Query: 398 PIQAQXWPIAMSGKNLV 448
           P+Q    PI M+G++L+
Sbjct: 221 PVQKHALPIIMNGRDLM 237



 Score = 25.0 bits (52), Expect = 0.52
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 457 QTGSGKTLAYILPAI 501
           QTGSGKT A+ +P I
Sbjct: 241 QTGSGKTAAFAVPII 255


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 540 HHLSE*AVGCFVHNG 496
           HHL+  AV CF+  G
Sbjct: 371 HHLARHAVACFLTRG 385


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/25 (28%), Positives = 18/25 (72%)
 Frame = +2

Query: 242 QKITNEVEEYRNNHEVTVSGVEVHN 316
           +K+T + +E R +++ ++S ++ HN
Sbjct: 240 KKLTEDTQERRLSNKGSISKLQFHN 264


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 97  TGIIAVETVVPNLEEATNSA 156
           T + A   V P +EE TN+A
Sbjct: 412 TALGAAALVAPGMEEPTNTA 431


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,064
Number of Sequences: 438
Number of extensions: 2775
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)