Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060388.seq
(557 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 86 2e-17
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 77 6e-15
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 77 6e-15
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 72 3e-13
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 72 3e-13
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 72 3e-13
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 65 3e-11
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 64 8e-11
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 59 2e-09
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 58 5e-09
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 55 4e-08
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 50 1e-06
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 46 2e-05
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 45 3e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 44 5e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 43 1e-04
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 40 0.001
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 40 0.001
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 39 0.003
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 36 0.018
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 36 0.018
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 35 0.042
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 35 0.042
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 34 0.056
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 34 0.056
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 33 0.13
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 33 0.13
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 33 0.17
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 32 0.23
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 32 0.23
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 32 0.23
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 32 0.30
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 32 0.30
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 29 2.1
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 29 2.1
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 29 2.1
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 29 2.1
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 29 2.8
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 29 2.8
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 29 2.8
At2g33420.1 68415.m04096 expressed protein 28 3.7
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 28 4.9
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 28 4.9
At5g08130.1 68418.m00948 basic helix-loop-helix (bHLH) family pr... 28 4.9
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 4.9
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 27 6.4
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 27 6.4
At2g25460.1 68415.m03049 expressed protein 27 6.4
At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein lo... 27 6.4
At3g58430.1 68416.m06512 meprin and TRAF homology domain-contain... 27 8.5
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 27 8.5
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 27 8.5
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 27 8.5
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 27 8.5
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 27 8.5
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 27 8.5
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 27 8.5
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 85.8 bits (203), Expect = 2e-17
Identities = 34/66 (51%), Positives = 48/66 (72%)
Frame = +2
Query: 257 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSG 436
EVEEYR E+TV G ++ P++ F + FPDYV + VK G+ EPTPIQ+Q WP+AM G
Sbjct: 77 EVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKG 136
Query: 437 KNLVGV 454
++L+G+
Sbjct: 137 RDLIGI 142
Score = 35.5 bits (78), Expect = 0.024
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIVH 507
+TGSGKTL+Y+LPAIVH
Sbjct: 144 ETGSGKTLSYLLPAIVH 160
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 77.4 bits (182), Expect = 6e-15
Identities = 28/66 (42%), Positives = 48/66 (72%)
Frame = +2
Query: 257 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSG 436
+V YR +++V G +V P++ F++ANFPD + + + +G+ EPTPIQAQ WP+A+ G
Sbjct: 143 DVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKG 202
Query: 437 KNLVGV 454
++L+G+
Sbjct: 203 RDLIGI 208
Score = 37.1 bits (82), Expect = 0.008
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIVHKTTNRLFGE 534
+TGSGKTLAY+LPA+VH + G+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQ 235
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 77.4 bits (182), Expect = 6e-15
Identities = 28/66 (42%), Positives = 48/66 (72%)
Frame = +2
Query: 257 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSG 436
+V YR +++V G +V P++ F++ANFPD + + + +G+ EPTPIQAQ WP+A+ G
Sbjct: 143 DVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKG 202
Query: 437 KNLVGV 454
++L+G+
Sbjct: 203 RDLIGI 208
Score = 37.1 bits (82), Expect = 0.008
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIVHKTTNRLFGE 534
+TGSGKTLAY+LPA+VH + G+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQ 235
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 71.7 bits (168), Expect = 3e-13
Identities = 31/66 (46%), Positives = 42/66 (63%)
Frame = +2
Query: 263 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKN 442
E Y HE+TVSG +V P+ FE FP + + V + G+ PTPIQAQ WPIAM G++
Sbjct: 138 EAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRD 197
Query: 443 LVGVLK 460
+V + K
Sbjct: 198 IVAIAK 203
Score = 29.5 bits (63), Expect = 1.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIVH 507
+TGSGKTL Y++P +H
Sbjct: 203 KTGSGKTLGYLIPGFLH 219
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 71.7 bits (168), Expect = 3e-13
Identities = 31/66 (46%), Positives = 42/66 (63%)
Frame = +2
Query: 263 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKN 442
E Y HE+TVSG +V P+ FE FP + + V + G+ PTPIQAQ WPIAM G++
Sbjct: 138 EAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRD 197
Query: 443 LVGVLK 460
+V + K
Sbjct: 198 IVAIAK 203
Score = 29.5 bits (63), Expect = 1.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIVH 507
+TGSGKTL Y++P +H
Sbjct: 203 KTGSGKTLGYLIPGFLH 219
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 71.7 bits (168), Expect = 3e-13
Identities = 31/66 (46%), Positives = 42/66 (63%)
Frame = +2
Query: 263 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKN 442
E Y HE+TVSG +V P+ FE FP + + V + G+ PTPIQAQ WPIAM G++
Sbjct: 138 EAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRD 197
Query: 443 LVGVLK 460
+V + K
Sbjct: 198 IVAIAK 203
Score = 29.5 bits (63), Expect = 1.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIVH 507
+TGSGKTL Y++P +H
Sbjct: 203 KTGSGKTLGYLIPGFLH 219
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 65.3 bits (152), Expect = 3e-11
Identities = 25/68 (36%), Positives = 41/68 (60%)
Frame = +2
Query: 257 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSG 436
E +YR + VSG +VH P++ FE+ F + +K Y++PT IQ Q PI +SG
Sbjct: 206 ETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSG 265
Query: 437 KNLVGVLK 460
++++G+ K
Sbjct: 266 RDVIGIAK 273
Score = 31.1 bits (67), Expect = 0.52
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIVH 507
+TGSGKT A++LP IVH
Sbjct: 273 KTGSGKTAAFVLPMIVH 289
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 63.7 bits (148), Expect = 8e-11
Identities = 27/67 (40%), Positives = 40/67 (59%)
Frame = +2
Query: 260 VEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGK 439
VE YR HEVT +G + P FE + P + + + + G+ PTPIQAQ WPIA+ +
Sbjct: 414 VEIYRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSR 473
Query: 440 NLVGVLK 460
++V + K
Sbjct: 474 DIVAIAK 480
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIV 504
+TGSGKTL Y++PA +
Sbjct: 480 KTGSGKTLGYLIPAFI 495
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 58.8 bits (136), Expect = 2e-09
Identities = 27/74 (36%), Positives = 42/74 (56%)
Frame = +2
Query: 239 SQKITNEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXW 418
S+ + V YR E+ V G +V PIQ++ + + +K + Y++P PIQAQ
Sbjct: 368 SRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQAL 427
Query: 419 PIAMSGKNLVGVLK 460
PI MSG++ +GV K
Sbjct: 428 PIIMSGRDCIGVAK 441
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIVH 507
+TGSGKTL ++LP + H
Sbjct: 441 KTGSGKTLGFVLPMLRH 457
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 513 NQPPIRRGDGPIALV 557
+QPP+ GDGPI LV
Sbjct: 460 DQPPVEAGDGPIGLV 474
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 57.6 bits (133), Expect = 5e-09
Identities = 26/74 (35%), Positives = 41/74 (55%)
Frame = +2
Query: 239 SQKITNEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXW 418
S+ EV YR E+ V G +V PI+++ + + +K + Y++P PIQ Q
Sbjct: 501 SRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQAL 560
Query: 419 PIAMSGKNLVGVLK 460
PI MSG++ +GV K
Sbjct: 561 PIIMSGRDCIGVAK 574
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIVH 507
+TGSGKTL ++LP + H
Sbjct: 574 KTGSGKTLGFVLPMLRH 590
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 513 NQPPIRRGDGPIALV 557
+QPP+ GDGPI LV
Sbjct: 593 DQPPVEAGDGPIGLV 607
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 54.8 bits (126), Expect = 4e-08
Identities = 22/68 (32%), Positives = 41/68 (60%)
Frame = +2
Query: 251 TNEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAM 430
T +++ R +TV+G ++ PI+ F + FP + + +K G PTPIQ Q P+ +
Sbjct: 73 TKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVL 132
Query: 431 SGKNLVGV 454
SG++++G+
Sbjct: 133 SGRDMIGI 140
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1
Query: 460 TGSGKTLAYILPAIV 504
TGSGKTL ++LP I+
Sbjct: 143 TGSGKTLVFVLPMII 157
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 50.0 bits (114), Expect = 1e-06
Identities = 20/61 (32%), Positives = 37/61 (60%)
Frame = +2
Query: 272 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLVG 451
R + V+G ++ PI+ F++ FP V +K G +PTPIQ Q P+ ++G++++G
Sbjct: 129 RKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIG 188
Query: 452 V 454
+
Sbjct: 189 I 189
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 45.6 bits (103), Expect = 2e-05
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +2
Query: 257 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAM 430
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 431 SGKNLVGVLK 460
G++L+G+ K
Sbjct: 150 DGRDLIGIAK 159
Score = 30.3 bits (65), Expect = 0.91
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIVH 507
+TGSGKTLA+ +PAI+H
Sbjct: 159 KTGSGKTLAFGIPAIMH 175
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 45.2 bits (102), Expect = 3e-05
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Frame = +2
Query: 233 WSSQKITNEVEE----YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTP 400
WS +++ E +R + ++ G + P++ +EE+ + + V+ GYK+P+P
Sbjct: 279 WSDKRLEEMTERDWRIFREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSP 338
Query: 401 IQAQXWPIAMSGKNLVGV 454
IQ P+ + ++++G+
Sbjct: 339 IQMAAIPLGLQQRDVIGI 356
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 44.4 bits (100), Expect = 5e-05
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = +2
Query: 290 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNL 445
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDL 207
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 43.2 bits (97), Expect = 1e-04
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Frame = +2
Query: 272 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQXWPIAMSGK 439
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 440 NLVGVLKRVPAKRWPTSCQPLC-TKQPT 520
K + C L K+P+
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKLKRPS 207
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +2
Query: 368 VKTMGYKEPTPIQAQXWPIAMSGKNLVGVLK 460
V + G+ P+PIQAQ WPIAM +++V + K
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAK 274
Score = 31.1 bits (67), Expect = 0.52
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 263 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 352
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
Score = 29.5 bits (63), Expect = 1.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIVH 507
+TGSGKTL Y++P +H
Sbjct: 274 KTGSGKTLGYLIPGFMH 290
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +2
Query: 299 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
G V P+ F P + ++T GY PTPIQ Q P A++GK+L+
Sbjct: 102 GSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLL 151
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 329 FEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLVGVLK 460
FE N V +K GYK PTPIQ + P+ +SG ++V + +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMAR 73
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 35.9 bits (79), Expect = 0.018
Identities = 14/50 (28%), Positives = 30/50 (60%)
Frame = +2
Query: 305 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLVGV 454
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++G+
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGL 52
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 35.9 bits (79), Expect = 0.018
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +2
Query: 287 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
+ SG V P+ F E + + + ++ Y +PTP+Q PI + G++L+
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLM 200
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 34.7 bits (76), Expect = 0.042
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +2
Query: 257 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSG 436
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 437 KNLVGVLK 460
K++V K
Sbjct: 84 KDVVARAK 91
Score = 31.1 bits (67), Expect = 0.52
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +1
Query: 436 KEFSWRTQTGSGKTLAYILPAI 501
K+ R +TGSGKTLAY+LP +
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLL 105
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 34.7 bits (76), Expect = 0.042
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +2
Query: 287 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
+ SG V P+ F E + + + ++ Y +PTP+Q PI +G++L+
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLM 187
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 34.3 bits (75), Expect = 0.056
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +2
Query: 287 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLM 192
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 34.3 bits (75), Expect = 0.056
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +2
Query: 287 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLM 192
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 33.1 bits (72), Expect = 0.13
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +2
Query: 329 FEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLVGVLKRVPAKRWPTSCQPLCT 508
FE+ + G+ G++ P+PIQ + PIA++G++++ K K C P+
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKT-AAFCIPVLE 191
Query: 509 K 511
K
Sbjct: 192 K 192
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 33.1 bits (72), Expect = 0.13
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +2
Query: 329 FEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLVGVLKRVPAKRWPTSCQPLCT 508
FE+ + G+ G++ P+PIQ + PIA++G++++ K K C P+
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKT-AAFCIPVLE 191
Query: 509 K 511
K
Sbjct: 192 K 192
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 317 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
PI+ F++ D V +GV GYK+P+ IQ + + G++++
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVI 63
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 32.3 bits (70), Expect = 0.23
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 329 FEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLVGVLK 460
FE + D + +K MG+ T IQA+ P M G++++G +
Sbjct: 156 FESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAAR 199
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/15 (66%), Positives = 15/15 (100%)
Frame = +1
Query: 457 QTGSGKTLAYILPAI 501
+TGSGKTLA+++PA+
Sbjct: 199 RTGSGKTLAFLIPAV 213
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 32.3 bits (70), Expect = 0.23
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 329 FEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLVGVLKRVPAKRWPTSCQPLCT 508
FE+ + +G+ G+++P+PIQ + PIA++G +++ K K C P+
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKT-GAFCIPVLE 184
Query: 509 K 511
K
Sbjct: 185 K 185
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 32.3 bits (70), Expect = 0.23
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 329 FEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLVGVLKRVPAKRWPTSCQPLCT 508
FE+ + +G+ G+++P+PIQ + PIA++G +++ K K C P+
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKT-GAFCIPVLE 184
Query: 509 K 511
K
Sbjct: 185 K 185
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 31.9 bits (69), Expect = 0.30
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +2
Query: 329 FEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLVGVLKRVPAK 475
FE+ + +G+ G+++P+PIQ + PIA++G +++ K K
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 31.9 bits (69), Expect = 0.30
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +2
Query: 329 FEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLVGV 454
FE ++ + K +G ++PTP+Q P ++G++++G+
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGL 101
Score = 30.3 bits (65), Expect = 0.91
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +1
Query: 367 CKDNGLQRTXXXXXXXXXXXXVWKEFSWRTQTGSGKTLAYILPAIVHKTTNRLFG 531
CK+ G+++ ++ QTGSGKT A+ LP I+H+ +G
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILHRLAEDPYG 126
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 454 TQTGSGKTLAYILPAI 501
+ TGSGKTLAY+LP +
Sbjct: 156 SHTGSGKTLAYLLPIV 171
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 436 KEFSWRTQTGSGKTLAYILPAI 501
K+ +TGSGKTLA+++PA+
Sbjct: 127 KDVLGAARTGSGKTLAFLIPAV 148
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 457 QTGSGKTLAYILPAIVHKTTNRLFG 531
Q+GSGKTLAY++P I L G
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQG 443
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +2
Query: 377 MGYKEPTPIQAQXWPIAMSGKNLV 448
MG++ PT +QAQ P+ +SG++++
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVL 71
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 460 TGSGKTLAYILPAIVH 507
TG+GKT+AY+ P I H
Sbjct: 76 TGTGKTIAYLAPLIHH 91
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +1
Query: 436 KEFSWRTQTGSGKTLAYILPAI 501
K+ + +TG+GKT+A++LPAI
Sbjct: 420 KDVLAKAKTGTGKTVAFLLPAI 441
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/59 (30%), Positives = 23/59 (38%)
Frame = +1
Query: 370 KDNGLQRTXXXXXXXXXXXXVWKEFSWRTQTGSGKTLAYILPAIVHKTTNRLFGEVMVR 546
+D+G R K+ +TGSGKT Y+ P I T L EV R
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNR 154
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 329 FEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMSGKNLV 448
FEE PD + ++ G+ PT +Q+ P + G + V
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAV 151
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +1
Query: 451 RTQTGSGKTLAYILPAI 501
++ TGSGKTLAY+LP +
Sbjct: 153 QSYTGSGKTLAYLLPIL 169
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 32 SKRIHSLNKHLQLNPKI 82
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 451 RTQTGSGKTLAYILPAI 501
R +TG GKTLA++LP +
Sbjct: 139 RARTGQGKTLAFVLPIL 155
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +1
Query: 436 KEFSWRTQTGSGKTLAYILPAI 501
K+ + +TG+GKT+A++LP+I
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSI 139
>At5g08130.1 68418.m00948 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 409
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 190 DLEDLEDLVGKKNSLEFSKDHQ*SRRVQK*SRGN 291
DL+D ED + KK S S+ H+ RV+ RG+
Sbjct: 115 DLDDEEDFIMKKESSSTSQSHRVDLRVKADVRGS 148
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 32 SKRIHSLNKHLQLNPKI 82
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +1
Query: 436 KEFSWRTQTGSGKTLAYILPAI 501
K+ + +TG+GKT+A++LP+I
Sbjct: 92 KDVLAKAKTGTGKTVAFLLPSI 113
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 433 WKEFSWRTQTGSGKTLAYILPAI 501
+K+ + TGSGKTLA+++P +
Sbjct: 53 YKDVAVDAATGSGKTLAFVVPLV 75
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 27.5 bits (58), Expect = 6.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 168 ETNYRRICCLLQIWNHRFHGYY 103
E + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein low
similarity to mannosidase [gi:5359712] from Cellulomonas
fimi
Length = 944
Score = 27.5 bits (58), Expect = 6.4
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = +2
Query: 305 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQA----QXWPIAMSGKNLVGVLKRVPA 472
E+ P +F++ + V ++G I+A + W I + K L G +K VP
Sbjct: 529 EIQYPEDFFKDTYYKYGFNPEVGSVGMPVAETIRATMPPEGWTIPLFKKGLDGFIKEVPN 588
Query: 473 KRW 481
+ W
Sbjct: 589 RMW 591
>At3g58430.1 68416.m06512 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains weak hit to Pfam PF00917: MATH
domain
Length = 552
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +1
Query: 88 CLVTGIIAVETVVPNLEEATNSAIIRLDLA-TVAVDLEDLEDLVGKK-NSLEFSKDHQ*S 261
C++ + +ET+ +LEE +N ++ D+A T D D + KK + ++ K+ + S
Sbjct: 383 CMIFLLSLIETLCQSLEELSNEDLVEADIALTYVKDAGFKVDWLEKKLDQVKEKKEKELS 442
Query: 262 RRVQ 273
VQ
Sbjct: 443 DMVQ 446
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 27.1 bits (57), Expect = 8.5
Identities = 9/17 (52%), Positives = 16/17 (94%)
Frame = +1
Query: 451 RTQTGSGKTLAYILPAI 501
+ +TG+GK++A++LPAI
Sbjct: 418 KAKTGTGKSMAFLLPAI 434
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 293 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMS 433
+SGV + FE F +KTM EP+P++ + P+ S
Sbjct: 198 LSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEPSPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 293 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMS 433
+SGV + FE F +KTM EP+P++ + P+ S
Sbjct: 221 LSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEPSPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 293 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXWPIAMS 433
+SGV + FE F +KTM EP+P++ + P+ S
Sbjct: 198 LSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEPSPVRDEYAPVIFS 244
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +1
Query: 460 TGSGKTLAYILPAI 501
TGSGKTLA++LP I
Sbjct: 62 TGSGKTLAFLLPFI 75
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +1
Query: 460 TGSGKTLAYILPAI 501
TGSGKTLA++LP I
Sbjct: 63 TGSGKTLAFLLPFI 76
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 27.1 bits (57), Expect = 8.5
Identities = 9/17 (52%), Positives = 16/17 (94%)
Frame = +1
Query: 451 RTQTGSGKTLAYILPAI 501
+ +TG+GK++A++LPAI
Sbjct: 371 KAKTGTGKSMAFLLPAI 387
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,854,851
Number of Sequences: 28952
Number of extensions: 201211
Number of successful extensions: 636
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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