Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060387.seq
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    30   0.34 
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    27   1.8  
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    27   2.4  
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    26   5.5  
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     26   5.5  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    25   7.3  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    25   9.6  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    25   9.6  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    25   9.6  

>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -1

Query: 257 LNASLSDVG*ESFRRQTPCYNTSTKVWMPSSSSY 156
           LN SL +V    F++QTP YN + KV +  SS +
Sbjct: 818 LNYSLENVVLNIFKKQTPYYNQADKVHLWQSSRF 851


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 182 PWCWYCNREFDDEKILIQHQKAKH 253
           P C +CN  F D+  L +H + KH
Sbjct: 245 PKCEFCNTHFYDDDELFKHCREKH 268


>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 271 DKCDI*MLRFLMLDENLFVVKLPVTIPAPRFGCLLLLPTH 152
           +KC+  +L  L L     +V LPV++  P FG L  L +H
Sbjct: 152 NKCNPKLLDCLCLYGYANIVWLPVSLATPPFGLLSTLASH 191


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 253 FKCHICHKKLYTGPGLSI 306
           F C++C   +YTG GL++
Sbjct: 381 FACYLCSVGVYTGAGLNV 398


>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 483 WFIIITVRPFAST*FLFLMFFHIFRGYTFHSINFYF 376
           W+ + T   +A T F F+M  + F  Y+ +  NF F
Sbjct: 57  WYRLFTNYLYAGTGFDFIMNIYFFYQYSTYLENFVF 92


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/71 (23%), Positives = 29/71 (40%)
 Frame = +1

Query: 223 DSHPTSESEAFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSNIEIEIYGMEG 402
           DS   S S         +KL     +  HC +       K P+ +P + N+E +   M G
Sbjct: 79  DSSSASNSSCSIPSSISEKLLPRDNVKTHCPKRSASCCGKKPDVMPLKINLESQTDFM-G 137

Query: 403 IPPEDVKEHEK 435
           +P +  + H +
Sbjct: 138 MPLQSQRPHSE 148


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 307 HCMQVHKEAIDKVPNSLPNRSN 372
           H   VHKE++ K+  +L +R+N
Sbjct: 119 HKTDVHKESVSKLSKNLESRNN 140


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 292 PGLSIHCMQVHKEAIDKVPNSLPNRSNIEIEIYGMEGIPPEDVKEHE 432
           PG+  + M    +A+D +P +L   S +   I  +  +    VKE++
Sbjct: 443 PGIDQYSMGAFADALDTIPLALAENSGLS-SIEALTAVKARHVKENK 488


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 439 FVSHVLSHLQGVYLPFHKFLF 377
           F S VL ++QGV+LP    LF
Sbjct: 299 FFSSVLPYVQGVFLPIKTKLF 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,082
Number of Sequences: 5004
Number of extensions: 49231
Number of successful extensions: 171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)