Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060387.seq
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866...    90   2e-18
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242...    31   0.61 
07_03_1165 - 24459156-24460139                                         31   1.1  
09_06_0259 - 21906612-21907109                                         29   4.3  
12_02_0397 + 18581301-18581561,18581584-18581676                       28   7.5  
09_04_0210 + 15644151-15644609                                         27   9.9  
06_03_0947 + 26248378-26248494,26248600-26248764,26248843-262489...    27   9.9  

>09_06_0277 -
           21983049-21983080,21983250-21984788,21986619-21986655,
           21987612-21987665,21987781-21987893,21988272-21988660,
           21988783-21988903,21989245-21989342,21989963-21990153
          Length = 857

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 35/63 (55%), Positives = 50/63 (79%)
 Frame = +1

Query: 241 ESEAFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSNIEIEIYGMEGIPPEDV 420
           +++ FKCH+CHKKL T  G++IH +QVHKE++ KVPN+ P R + EIEI+GM+GIPP+ +
Sbjct: 31  KAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPERESTEIEIFGMQGIPPDVL 90

Query: 421 KEH 429
             H
Sbjct: 91  AAH 93



 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 25/34 (73%), Positives = 31/34 (91%)
 Frame = +2

Query: 152 MGRKKKKASKPWCWYCNREFDDEKILIQHQKAKH 253
           MG+KKK+  K +C+YC+REFDDEKIL+QHQKAKH
Sbjct: 1   MGKKKKRVEKVFCYYCDREFDDEKILVQHQKAKH 34


>02_05_0473 +
           29319824-29322511,29322659-29322820,29324133-29324249,
           29324360-29324469,29324504-29324540,29324696-29324862,
           29325002-29325089,29325163-29325270
          Length = 1158

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 214 RRKDSHPTSESEAFKCHICHKKLYTGPGLSIHCMQVHKEAI 336
           R   +HP   S   KC IC ++     GL +H  +VHK+ +
Sbjct: 453 REDGTHP---SPGLKCKICSQEFSDDQGLGLHWTEVHKKEV 490


>07_03_1165 - 24459156-24460139
          Length = 327

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 250 AFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLP 360
           +F CH+C+K+  +   +  H M+VH    +K P SLP
Sbjct: 112 SFPCHLCNKEFGSRKAVHGH-MRVHHAENEKEPMSLP 147


>09_06_0259 - 21906612-21907109
          Length = 165

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 247 EAFKCHICHKKLYTGPGLSIHCMQVHK 327
           EAF C+ CH+K ++   L  H    HK
Sbjct: 47  EAFSCNYCHRKFFSSQALGGH-QNAHK 72


>12_02_0397 + 18581301-18581561,18581584-18581676
          Length = 117

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 228 RIFSSSNSLLQYQHQGLDAFFFF 160
           R+F++ N+++Q QH  L A+F F
Sbjct: 86  RMFANINNMMQQQHDDLQAYFRF 108


>09_04_0210 + 15644151-15644609
          Length = 152

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 188 CWYCNREFDDEKILIQHQKA 247
           C YC+R+FD  + L  HQ A
Sbjct: 36  CMYCDRKFDSSQALGGHQNA 55


>06_03_0947 +
           26248378-26248494,26248600-26248764,26248843-26248952,
           26249065-26249179,26249310-26249408,26249485-26249694,
           26249802-26250965
          Length = 659

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = -3

Query: 390 INFYFYI*PIWQ*IWYFVYGFFMYLHAVYGQSRSCVQLFVTNVTFKCFA--F*CWMRIFS 217
           I  +F +  IW   +Y+++GF   + A+     +C ++ V    F+  +  +  W R + 
Sbjct: 533 IELFFILTSIWLHQFYYIFGFLFLVFAIL--VVTCAEIAVVLCYFQLCSEDYEWWWRSYL 590

Query: 216 SSNSLLQYQHQGLDAFFFF 160
           ++ S   Y      AF+FF
Sbjct: 591 TAGSSALYLFL-YAAFYFF 608


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,854,551
Number of Sequences: 37544
Number of extensions: 326256
Number of successful extensions: 977
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)