Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060387.seq
(656 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083) 107 6e-24
SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14) 35 0.051
SB_50411| Best HMM Match : zf-C2H2 (HMM E-Value=1.3e-08) 34 0.089
SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.089
SB_5870| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 32 0.47
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 0.83
SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_11362| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-32) 31 1.1
SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07) 29 2.5
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 2.5
SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32) 29 2.5
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 4.4
SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 4.4
SB_12462| Best HMM Match : Kinesin (HMM E-Value=0) 29 4.4
SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 5.8
SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061) 28 5.8
SB_972| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_21010| Best HMM Match : PHD (HMM E-Value=7e-10) 28 7.7
SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 7.7
SB_22059| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_11979| Best HMM Match : zf-C3HC4 (HMM E-Value=0.061) 28 7.7
SB_5864| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
Length = 440
Score = 107 bits (258), Expect = 6e-24
Identities = 44/66 (66%), Positives = 56/66 (84%)
Frame = +1
Query: 241 ESEAFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSNIEIEIYGMEGIPPEDV 420
+++ FKC ICHKKLYTGPGL+IHC QVHKE + +PNSLPNR + EIEIYGMEGIP +D+
Sbjct: 31 KAKHFKCMICHKKLYTGPGLAIHCTQVHKETVSAIPNSLPNRGDPEIEIYGMEGIPEKDL 90
Query: 421 KEHEKQ 438
KE +++
Sbjct: 91 KERQQR 96
Score = 79.0 bits (186), Expect = 3e-15
Identities = 31/34 (91%), Positives = 32/34 (94%)
Frame = +2
Query: 152 MGRKKKKASKPWCWYCNREFDDEKILIQHQKAKH 253
MGRKKKK KPWCWYCNR+FDDEKILIQHQKAKH
Sbjct: 1 MGRKKKKPMKPWCWYCNRDFDDEKILIQHQKAKH 34
>SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14)
Length = 910
Score = 35.1 bits (77), Expect = 0.051
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 188 CWYCNREFDDEKILIQHQKAKHLNVTFVTKSCTQDLDCPYTACRYIKK 331
C C++EF E L++H+KA H N FV + C + + R+ KK
Sbjct: 5 CDTCSKEFTQETNLVRHKKAIHGNRAFVCERCQKSFNRKDILKRHEKK 52
>SB_50411| Best HMM Match : zf-C2H2 (HMM E-Value=1.3e-08)
Length = 108
Score = 34.3 bits (75), Expect = 0.089
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 188 CWYCNREFDDEKILIQHQKAKHLNVTFVTKSCTQDLD 298
C C++EF E L++H+KA H N FV + C + +
Sbjct: 40 CDTCSKEFTQETNLVRHKKAIHGNRVFVCERCQKSFN 76
>SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 788
Score = 34.3 bits (75), Expect = 0.089
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 188 CWYCNREFDDEKILIQHQKAKHLNVTFVTKSCTQDLDCPYTACRYIKK 331
C C +EF + L +H+++ H N +F + C Q L+ T R++KK
Sbjct: 497 CDICKKEFSLKTNLARHKRSVHGNQSFQCEKCEQSLNRKDTFKRHMKK 544
>SB_5870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 652 AIXILGACMNGGIM*FIAKCPGYI 581
A+ + CMNGGI IA CPGYI
Sbjct: 101 AMVTMRPCMNGGICEAIATCPGYI 124
>SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +2
Query: 170 KASKPW-CWYCNREFDDEKILIQHQKAKHLNV-----TFVTKSCTQDLD 298
K +PW C YC+++F + + +H + HL V T+ K C D
Sbjct: 203 KTERPWGCVYCSKKFKTKAKVAEHTRRTHLKVKPFSCTYCNKKCASKSD 251
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 238 SESEAFKCHICHKKLYTGPGLSIHCMQVHKE 330
++ +KC IC KK GLSIH ++H E
Sbjct: 484 TDERPYKCDICGKKFRQQGGLSIH-KKIHTE 513
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 31.9 bits (69), Expect = 0.47
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 238 SESEAFKCHICHKKLYTGPGLSIHCMQVH 324
S+ + FKCHICH++ ++ H M++H
Sbjct: 422 SKEKPFKCHICHRRFAQSSSVTTH-MRIH 449
>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1041
Score = 31.1 bits (67), Expect = 0.83
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 176 SKPW-CWYCNREFDDEKILIQHQKAKHLNVTFVTKSCT 286
+KP+ C YC R F+D ++L++H ++ F K C+
Sbjct: 929 TKPYKCQYCVRSFNDSQMLVRHIRSHTGEKPFKCKHCS 966
>SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 978
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +1
Query: 247 EAFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSNIEIEIYGMEGIPPEDV 420
+AFKC CHK + H + H +A P+S ++S+ E +EGI +DV
Sbjct: 297 KAFKCEHCHKVFGHSFDRARHVKKFHSDAKPVTPSSQSDQSHELSE--AIEGIQNKDV 352
>SB_11362| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-32)
Length = 382
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 220 KDSHPTSESEAFKCHICHKKLYTGPGLSIHCMQVHK 327
K +H E ++CH+C + G GL+ H HK
Sbjct: 324 KITHEGGELAKYECHLCGARYTRGTGLTSHLKAKHK 359
>SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 214 RRKDSHPTSESEAFKCHICHKKLYTGPGLSIHCMQVHK 327
+ K+SH E E +KC+ C K L+ H +++HK
Sbjct: 633 KHKESHRIVEQEKWKCNWCEKSYTRKSNLTAH-LKMHK 669
>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
Length = 1146
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -2
Query: 307 VWTVQVLCTAFCDKCDI*MLRFLMLDENLFVVKL 206
V +VQVLCT FC C + RF++L V KL
Sbjct: 830 VTSVQVLCTDFCYFCSGSLYRFVLLLFRFSVQKL 863
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -2
Query: 307 VWTVQVLCTAFCDKCDI*MLRFLMLDENLFVVKLPVTIPAPR 182
V +VQVLCTA C C + RF++L LF + + V + + R
Sbjct: 613 VTSVQVLCTAPCYFCSDSLYRFVLL---LFRLSVQVRVTSVR 651
>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1498
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 188 CWYCNREFDDEKILIQHQKAKHLNVTFVTKSCTQD 292
C C+R F + L H KA H NV +T S +D
Sbjct: 593 CDDCDRAFKRPRDLETHSKAHHANVDKMTHSANED 627
>SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +2
Query: 188 CWYCNREFDDEKILIQHQKAKHLNVTFV-TKSCTQDLDCPYTACRYIKKP*TKYQIHCQ 361
C +C F + +H K +H N TF+ ++C DC ++ + T C+
Sbjct: 512 CMFCEEVFLSPGVFHKHLKDRHYNTTFIFCQNCHIMFDCEEDLAKHKETHTTNMIFKCE 570
>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
Length = 648
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/68 (27%), Positives = 25/68 (36%)
Frame = +2
Query: 155 GRKKKKASKPWCWYCNREFDDEKILIQHQKAKHLNVTFVTKSCTQDLDCPYTACRYIKKP 334
GR + KP C C DE I + + V C + DCP RY+ +
Sbjct: 132 GRHHAETLKPRCAAC-----DEIIFAEQCTEAEDSCWHVQHFCCFECDCPLGGMRYVMRD 186
Query: 335 *TKYQIHC 358
Y HC
Sbjct: 187 NKPYCCHC 194
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 188 CWYCNREFDDEKILIQHQKAKHL 256
C YC +F+ +KIL+ H A HL
Sbjct: 909 CKYCVLQFESKKILVSHLLAIHL 931
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 188 CWYCNREFDDEKILIQHQKAKHLNVT 265
C YC F E +I+H ++ H+ VT
Sbjct: 764 CQYCGYYFKCETSIIRHMESNHIGVT 789
>SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1741
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 235 TSESEAFKCHICHKKLYTGPGLSIH 309
T + FKC IC K+ T GL+ H
Sbjct: 1299 TGNQKLFKCDICEKEFKTHVGLNFH 1323
>SB_12462| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 803
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 592 PGYIPGGTGPMGVGNIPGXTVEGPAPSN 509
PG +PGG P G N PG + P PSN
Sbjct: 662 PGVMPGGLTPGG--NTPGRGRKSPNPSN 687
>SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2126
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 164 KKKASKPWCWYCNREFDDEKILIQHQKAKHLNV 262
+K+ KP C C EFD + +L H H N+
Sbjct: 1311 EKRHMKPRCRECGLEFDHKNLLKIHMDCYHSNM 1343
>SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1346
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +1
Query: 238 SESEAFKCHICHKKLYTGPGLSIHCMQVHK 327
SE F C C K L HCM VH+
Sbjct: 1192 SEQRPFSCEQCMKSFNRSGDLRRHCMTVHE 1221
>SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061)
Length = 503
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 217 RKDSHPTSESEAFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNS 354
R D T E+ F C +C+K + L H H + D +P +
Sbjct: 22 RADRTVTEETSDFICPMCNKSFFAAEELQSHFDLEHSASQDFIPET 67
>SB_972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 378
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +2
Query: 179 KPWCWYCNREFDDEK----ILIQHQKAKH-LNVTFVTKSCTQDLDCPYTACRYIKKP*TK 343
K +C +C+REF++ + ++ H +H L + V + C C Y R ++P T
Sbjct: 32 KVFCMFCDREFENTRGKNDAVLHHLLVEHQLVIADVAQICDMRRYCEYWKGRLKEEPITN 91
Query: 344 Y 346
+
Sbjct: 92 F 92
>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 27.9 bits (59), Expect = 7.7
Identities = 8/46 (17%), Positives = 23/46 (50%)
Frame = -3
Query: 441 FLFLMFFHIFRGYTFHSINFYFYI*PIWQ*IWYFVYGFFMYLHAVY 304
+ + +++ + Y +H +Y+Y + +Y+ Y ++ Y + Y
Sbjct: 116 YYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYYYYYYY 161
>SB_21010| Best HMM Match : PHD (HMM E-Value=7e-10)
Length = 389
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/50 (24%), Positives = 22/50 (44%)
Frame = +1
Query: 232 PTSESEAFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSNIEI 381
P + + C IC ++ GPGL H + + D N+ + +I +
Sbjct: 194 PEDRKKPYVCEICGRRYKNGPGLKYHYTHYNHDQ-DNTSNAAQDDHSISL 242
>SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 935
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/59 (25%), Positives = 23/59 (38%)
Frame = +1
Query: 253 FKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSNIEIEIYGMEGIPPEDVKEH 429
F+C +CHK LS H VH++ + P P + G + P + H
Sbjct: 484 FECPVCHKAFSQTGNLSKHVRYVHEK--QQRPKEKPRDKKYFCSLCGKAFLCPSSLSMH 540
>SB_22059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 204 GSLTTKRFSSNIRKRSI*MSHLSQKAVHRTWTVHTLH 314
G++ + IRK + H Q+A+HRT T H H
Sbjct: 31 GTICNALLYAVIRKTPMRARHRPQQALHRTLTEHAFH 67
>SB_11979| Best HMM Match : zf-C3HC4 (HMM E-Value=0.061)
Length = 63
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +1
Query: 238 SESEAFKCHICHKKLYTGPGLSIHCMQVHKE 330
S +E KC IC + YT P +SI C VH E
Sbjct: 4 SVTEKVKCLICMEP-YTVPLVSISCWHVHCE 33
>SB_5864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 149 KMGRKKKKASKPW-CWYCNREFDDEKILIQHQKAKHLNVTFVTKSCTQDLDCPYTACRYI 325
K+ +K KP+ C C ++F LI+H++ F+ + C Q +C R++
Sbjct: 174 KVHMRKHTQEKPYECETCGKQFRVTSDLIRHKRIHTGCKPFLCEVCGQGFNCHANRNRHL 233
Query: 326 K 328
+
Sbjct: 234 R 234
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,319,707
Number of Sequences: 59808
Number of extensions: 369565
Number of successful extensions: 1251
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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